View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6790_low_8 (Length: 484)

Name: NF6790_low_8
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6790_low_8
NF6790_low_8
[»] chr4 (45 HSPs)
chr4 (19-477)||(24806660-24807117)
chr4 (363-473)||(13834388-13834499)
chr4 (399-473)||(45615718-45615792)
chr4 (399-473)||(56095118-56095192)
chr4 (401-473)||(51150940-51151012)
chr4 (305-474)||(17381483-17381653)
chr4 (399-473)||(32934074-32934148)
chr4 (382-473)||(38080870-38080961)
chr4 (399-473)||(38932751-38932825)
chr4 (300-476)||(8170892-8171069)
chr4 (300-476)||(11839766-11839943)
chr4 (382-463)||(8755908-8755989)
chr4 (388-473)||(47097417-47097502)
chr4 (363-474)||(51234396-51234508)
chr4 (391-473)||(312695-312777)
chr4 (363-476)||(48973334-48973448)
chr4 (399-471)||(36409656-36409727)
chr4 (399-471)||(36423822-36423893)
chr4 (399-474)||(26499394-26499469)
chr4 (391-473)||(6552521-6552603)
chr4 (391-473)||(6552921-6553003)
chr4 (414-476)||(9297464-9297526)
chr4 (412-473)||(40407572-40407633)
chr4 (401-468)||(9057354-9057421)
chr4 (131-197)||(12387973-12388039)
chr4 (399-477)||(14810274-14810352)
chr4 (429-475)||(33860293-33860339)
chr4 (417-474)||(31903367-31903424)
chr4 (399-463)||(4161827-4161891)
chr4 (300-423)||(11840018-11840142)
chr4 (382-446)||(14945565-14945629)
chr4 (300-426)||(12034380-12034507)
chr4 (300-367)||(26499277-26499344)
chr4 (433-476)||(50384545-50384588)
chr4 (417-476)||(51003583-51003642)
chr4 (437-471)||(8678051-8678085)
chr4 (300-378)||(17381282-17381360)
chr4 (430-476)||(39331097-39331143)
chr4 (354-442)||(1758351-1758440)
chr4 (399-476)||(40836729-40836806)
chr4 (323-426)||(2161722-2161825)
chr4 (430-474)||(7616900-7616944)
chr4 (401-477)||(33360914-33360990)
chr4 (399-467)||(46804957-46805025)
chr4 (401-473)||(48828025-48828097)
[»] chr6 (29 HSPs)
chr6 (300-469)||(10067659-10067829)
chr6 (399-469)||(25085023-25085093)
chr6 (399-476)||(16431588-16431665)
chr6 (130-237)||(697489-697596)
chr6 (300-474)||(9307397-9307571)
chr6 (301-444)||(10219536-10219680)
chr6 (399-473)||(26293485-26293559)
chr6 (352-476)||(28995466-28995591)
chr6 (389-473)||(17848762-17848846)
chr6 (128-216)||(23271187-23271275)
chr6 (354-475)||(31141969-31142090)
chr6 (399-469)||(6524958-6525028)
chr6 (130-232)||(17769748-17769850)
chr6 (395-477)||(29927653-29927735)
chr6 (419-469)||(33806854-33806904)
chr6 (382-463)||(21021037-21021118)
chr6 (388-476)||(7792207-7792295)
chr6 (401-476)||(31315214-31315289)
chr6 (395-476)||(18354559-18354640)
chr6 (399-476)||(18129947-18130024)
chr6 (412-448)||(22260475-22260511)
chr6 (416-476)||(24285090-24285150)
chr6 (417-476)||(9436671-9436730)
chr6 (428-474)||(2044391-2044437)
chr6 (411-473)||(21237273-21237335)
chr6 (415-476)||(3314737-3314797)
chr6 (401-474)||(9045386-9045459)
chr6 (415-476)||(23887605-23887666)
chr6 (352-424)||(33806700-33806773)
[»] chr5 (27 HSPs)
chr5 (301-476)||(917089-917265)
chr5 (399-473)||(11534900-11534974)
chr5 (399-473)||(11497960-11498034)
chr5 (399-473)||(11505316-11505390)
chr5 (399-473)||(11512710-11512784)
chr5 (399-473)||(11520086-11520160)
chr5 (399-473)||(11527494-11527568)
chr5 (351-476)||(3599844-3599971)
chr5 (399-469)||(27769868-27769938)
chr5 (405-463)||(42420403-42420461)
chr5 (356-444)||(7756956-7757045)
chr5 (416-477)||(8814178-8814239)
chr5 (301-476)||(8206224-8206400)
chr5 (394-473)||(9023352-9023431)
chr5 (412-475)||(29502353-29502416)
chr5 (302-472)||(6217577-6217749)
chr5 (399-466)||(9955361-9955428)
chr5 (131-216)||(30050464-30050547)
chr5 (352-476)||(26675054-26675178)
chr5 (352-476)||(26946662-26946786)
chr5 (399-476)||(37181246-37181323)
chr5 (399-479)||(7313982-7314062)
chr5 (433-476)||(14460083-14460126)
chr5 (303-345)||(29714747-29714789)
chr5 (380-477)||(18004500-18004596)
chr5 (399-476)||(27001214-27001291)
chr5 (399-476)||(32517917-32517994)
[»] chr8 (28 HSPs)
chr8 (306-476)||(21602107-21602278)
chr8 (399-476)||(3662414-3662491)
chr8 (349-474)||(7680943-7681069)
chr8 (349-469)||(33508620-33508741)
chr8 (412-473)||(41303083-41303144)
chr8 (300-471)||(6393782-6393952)
chr8 (363-476)||(3093882-3093996)
chr8 (389-474)||(26018687-26018772)
chr8 (389-473)||(1249211-1249295)
chr8 (307-474)||(21600407-21600575)
chr8 (399-476)||(21145467-21145544)
chr8 (414-476)||(3714923-3714984)
chr8 (399-465)||(4586873-4586938)
chr8 (391-473)||(36754657-36754739)
chr8 (399-475)||(7603991-7604067)
chr8 (416-476)||(24018014-24018074)
chr8 (417-476)||(16338265-16338324)
chr8 (300-469)||(17488131-17488301)
chr8 (298-427)||(18080178-18080307)
chr8 (399-473)||(33590208-33590282)
chr8 (430-475)||(2987008-2987053)
chr8 (399-476)||(10028545-10028622)
chr8 (432-473)||(42659934-42659975)
chr8 (389-469)||(4493034-4493114)
chr8 (297-377)||(14523974-14524054)
chr8 (300-378)||(4586748-4586826)
chr8 (352-469)||(10708549-10708667)
chr8 (382-422)||(9598056-9598096)
[»] chr7 (24 HSPs)
chr7 (126-237)||(43218722-43218833)
chr7 (399-473)||(8062789-8062863)
chr7 (398-476)||(34703725-34703803)
chr7 (134-231)||(11048867-11048964)
chr7 (401-477)||(32996337-32996413)
chr7 (389-471)||(5198019-5198101)
chr7 (389-474)||(18942826-18942911)
chr7 (388-473)||(40077599-40077684)
chr7 (352-471)||(27376273-27376392)
chr7 (399-465)||(1247620-1247686)
chr7 (399-477)||(12927671-12927749)
chr7 (304-476)||(5362246-5362419)
chr7 (399-464)||(38838563-38838628)
chr7 (354-476)||(10228752-10228875)
chr7 (297-474)||(40355003-40355181)
chr7 (300-374)||(46720051-46720125)
chr7 (432-476)||(29197030-29197074)
chr7 (430-469)||(3116924-3116963)
chr7 (400-463)||(8252311-8252374)
chr7 (416-462)||(39129080-39129126)
chr7 (301-448)||(19303518-19303665)
chr7 (401-469)||(39608415-39608483)
chr7 (430-477)||(26905149-26905196)
chr7 (397-477)||(32188152-32188232)
[»] chr2 (26 HSPs)
chr2 (394-473)||(7165657-7165736)
chr2 (389-475)||(6788308-6788394)
chr2 (411-473)||(17742577-17742639)
chr2 (399-476)||(15301518-15301595)
chr2 (300-476)||(40124262-40124439)
chr2 (399-473)||(41746424-41746498)
chr2 (413-465)||(20966132-20966184)
chr2 (414-476)||(2516769-2516831)
chr2 (399-477)||(21603509-21603587)
chr2 (417-476)||(15816891-15816950)
chr2 (403-476)||(30256232-30256305)
chr2 (401-476)||(1901591-1901666)
chr2 (391-462)||(31967458-31967529)
chr2 (399-468)||(20167467-20167536)
chr2 (399-476)||(33261009-33261086)
chr2 (380-424)||(25765383-25765427)
chr2 (416-475)||(8940069-8940128)
chr2 (300-379)||(39273380-39273459)
chr2 (394-444)||(17237470-17237520)
chr2 (399-476)||(12676479-12676556)
chr2 (430-475)||(19206434-19206479)
chr2 (399-444)||(23359442-23359487)
chr2 (399-476)||(26586476-26586553)
chr2 (416-476)||(7142327-7142387)
chr2 (420-476)||(13242534-13242590)
chr2 (399-471)||(43191839-43191911)
[»] chr3 (27 HSPs)
chr3 (302-476)||(14984407-14984581)
chr3 (303-468)||(53705891-53706057)
chr3 (399-476)||(34979107-34979184)
chr3 (417-477)||(40954482-40954542)
chr3 (401-476)||(46008625-46008700)
chr3 (389-476)||(23195653-23195740)
chr3 (401-473)||(41897941-41898013)
chr3 (301-469)||(51889961-51890130)
chr3 (436-476)||(26019400-26019440)
chr3 (430-476)||(30843668-30843714)
chr3 (352-472)||(14194858-14194979)
chr3 (148-237)||(39722338-39722427)
chr3 (386-477)||(22153669-22153761)
chr3 (352-436)||(32345655-32345738)
chr3 (389-477)||(54630824-54630912)
chr3 (354-444)||(2096273-2096364)
chr3 (358-476)||(5800211-5800330)
chr3 (402-468)||(50271494-50271560)
chr3 (399-476)||(3941643-3941720)
chr3 (397-474)||(12832206-12832283)
chr3 (430-476)||(20948290-20948336)
chr3 (399-473)||(27071280-27071354)
chr3 (399-476)||(1183148-1183225)
chr3 (427-476)||(24255328-24255377)
chr3 (396-448)||(31186616-31186668)
chr3 (404-476)||(36080625-36080697)
chr3 (433-473)||(50239873-50239913)
[»] scaffold0006 (1 HSPs)
scaffold0006 (131-237)||(112079-112185)
[»] chr1 (28 HSPs)
chr1 (391-473)||(49880163-49880245)
chr1 (394-477)||(7151907-7151989)
chr1 (400-474)||(27463840-27463914)
chr1 (414-476)||(6541117-6541179)
chr1 (300-476)||(34177415-34177593)
chr1 (398-473)||(31738286-31738361)
chr1 (417-476)||(36144981-36145040)
chr1 (390-469)||(52362020-52362099)
chr1 (401-476)||(5043426-5043501)
chr1 (399-469)||(5529808-5529878)
chr1 (399-473)||(8984021-8984095)
chr1 (389-474)||(8069069-8069154)
chr1 (349-465)||(30050536-30050653)
chr1 (391-476)||(35621487-35621572)
chr1 (414-469)||(21379426-21379481)
chr1 (389-476)||(32743261-32743348)
chr1 (429-476)||(34826993-34827040)
chr1 (389-463)||(9890608-9890682)
chr1 (391-473)||(45919840-45919922)
chr1 (430-477)||(39330129-39330177)
chr1 (417-476)||(52065614-52065673)
chr1 (399-449)||(3728129-3728179)
chr1 (363-465)||(38901645-38901746)
chr1 (300-345)||(13360353-13360398)
chr1 (297-338)||(50155845-50155886)
chr1 (430-475)||(51273373-51273418)
chr1 (393-469)||(26421469-26421545)
chr1 (389-473)||(47921890-47921974)
[»] scaffold0252 (1 HSPs)
scaffold0252 (399-473)||(17187-17261)
[»] scaffold0211 (1 HSPs)
scaffold0211 (391-473)||(20074-20156)
[»] scaffold0284 (1 HSPs)
scaffold0284 (391-473)||(2457-2539)
[»] scaffold0002 (1 HSPs)
scaffold0002 (399-477)||(349126-349204)
[»] scaffold0003 (1 HSPs)
scaffold0003 (399-476)||(328863-328940)
[»] scaffold0114 (1 HSPs)
scaffold0114 (391-469)||(35029-35107)
[»] scaffold0687 (1 HSPs)
scaffold0687 (399-475)||(1675-1751)
[»] scaffold0045 (1 HSPs)
scaffold0045 (303-477)||(20536-20710)
[»] scaffold0005 (1 HSPs)
scaffold0005 (399-477)||(29376-29454)


Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Complemental strand, 24807117 - 24806660
Alignment:
Q  19 atataatacggttaattgatcaatcaattagagtttattgtatcattgtattgtatgcatattatagttttttgtcctcttcgtggagataaagaggttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24807117 atataatacggttaattgatcaatcaattagagtttattgtatcattgtattgtatgcatattatagttttttgtcctcttcgtggagataaagaggttg 24807018  T
Q  119 attcgttactatcactacaagaaaaatgccatatacctaaggtggtttatagtgaccgacaaaaaactgtaggtattgataaattttacttacggaagga 218  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |||| |    
T  24807017 attcgttactatcactacaagaaaaatgccatatacctaagatggtttatattgaccgacaaaaaaccgtaggtattgataaattttacctacagaagca 24806918  T
Q  219 gccgtagatatagatatctnnnnnnnnnntagaaaatatcaaaataatatagagaacaggtttaatgaaattcttgactgaggtaatagtcattttggtt 318  Q
    | |||||||||||||||||          |||||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||||     
T  24806917 gacgtagatatagatatct-aaaaaaaaatagaaaatatcaaaataatacatagaacgggcttaatgaaattcttgactgaggtaatagtcattttggta 24806819  T
Q  319 tctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtccttattatgtatttcattaatcaaaatagtctctaacatt 418  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24806818 tctgaatgcgtaataagtagttacaatagtcccttaatgtattgaaatttgaaaatagtccttattatgtatttcattagtcaaaatagtctctaacatt 24806719  T
Q  419 aaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24806718 aaaataatttgttaatattgtcatagtagtttttcaatatacttacttattgtcatatt 24806660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 363 - 473
Target Start/End: Original strand, 13834388 - 13834499
Alignment:
Q  363 aaatttgaaaatagtcctt-attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatact 461  Q
    |||||| |||||||||||| ||| || | ||  ||| |||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||    
T  13834388 aaattttaaaatagtccttgattgtgcactttgttagtcaaaatagtctttaacattaaaataatttgttaatattgtcatattagtccttcaatatact 13834487  T
Q  462 tacttattgtca 473  Q
    ||||||||||||    
T  13834488 tacttattgtca 13834499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 45615792 - 45615718
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||    
T  45615792 tcaaaatagtctctaatattaaaataatttgttaatattgtcattttagtccttcaatatacttacttattgtca 45615718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 56095118 - 56095192
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  56095118 tcaacatagtccctaacattaaaataatttgttaatattgtcatattagtcttttaatatacttacttattgtca 56095192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 401 - 473
Target Start/End: Original strand, 51150940 - 51151012
Alignment:
Q  401 aaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||    
T  51150940 aaaatagtccctaacattaaaatattttgttaatattgtcatattagtacttcaatatacttacttattgtca 51151012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 474
Target Start/End: Complemental strand, 17381653 - 17381483
Alignment:
Q  305 tagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatcaaa 403  Q
    |||||| ||||||  ||||||| |||||||||||| ||||| | |||| |||||||  |||||  |||||||||| | ||| || | ||  |||||||||    
T  17381653 tagtcactttggtccctgaatgagtaacaagtagtcacaatagtccctcaatgtatcaaaattccaaaatagtccctgattgtgcactttgttaatcaaa 17381554  T
Q  404 atagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    ||||||  | | ||||||||| || ||||||||||||||||||||  ||||||||||||||||||| ||||    
T  17381553 atagtccttgatattaaaatatttcgttaatattgtcatattagtccttcaatatacttacttattatcat 17381483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 32934148 - 32934074
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||    
T  32934148 tcaaaatagtttctaacattaaaataatttgttaatattgtcacattagtcttttaatatacttacttgttgtca 32934074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 382 - 473
Target Start/End: Complemental strand, 38080961 - 38080870
Alignment:
Q  382 attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||| ||||| ||| |||||||||| | ||||||||||||| ||||||||||| |||||||||||  ||||||||||||| |||||||||    
T  38080961 attatgcatttcgttagtcaaaatagtttgtaacattaaaatactttgttaatatagtcatattagtacttcaatatacttatttattgtca 38080870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 38932825 - 38932751
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||||||||||||||||||| ||  |||||||||||||||||||  ||||||||||||| |||||||||    
T  38932825 tcaaaatagtctctaacattaaaatatttcattaatattgtcatattagtccttcaatatacttatttattgtca 38932751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 476
Target Start/End: Complemental strand, 8171069 - 8170892
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtc-cttattatgtatttcattaa 398  Q
    ||||| ||||| ||||||  ||| ||| ||||  |||||| | ||| | |||| |||||||  |||||| ||||||||| || ||| || | ||| |||     
T  8171069 ggtaacagtcactttggtccctggatgtgtaatgagtagtcataatagtccctcaatgtataaaaatttcaaaatagtctctgattttgcaattcgttag 8170970  T
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||| ||||||| ||||||||  ||  |||||||||||||||||||  ||||||||||||||||||||||||||    
T  8170969 tcaaaataatctctaatattaaaatgtttcattaatattgtcatattagtacttcaatatacttacttattgtcatat 8170892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 476
Target Start/End: Original strand, 11839766 - 11839943
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaa 398  Q
    |||||||| ||||||||| | |||||  ||||| |||||  ||||| | |||| ||| ||| ||||||| ||||||||||   ||| || |  || |||     
T  11839766 ggtaatagccattttggtctatgaatttgtaacgagtagccacaatagtccctcaatatatcgaaatttcaaaatagtcccagattgtgcacctcgttag 11839865  T
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||  | ||||||||||| || ||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  11839866 tcaaaatagtccttgacattaaaatacttcgttaatattgtcatattagtccttcaatacacttacttattgtcatat 11839943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 382 - 463
Target Start/End: Complemental strand, 8755989 - 8755908
Alignment:
Q  382 attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatactta 463  Q
    |||||| | ||| |||||||||||||||||||||||||||||| || |||||||||||||||||| |  || ||||||||||    
T  8755989 attatgcacttcgttaatcaaaatagtctctaacattaaaatacttcgttaatattgtcatattaatcctttaatatactta 8755908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 473
Target Start/End: Complemental strand, 47097502 - 47097417
Alignment:
Q  388 tatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||| ||| |||||||||||| ||||| ||||||| ||| |||||||||||||||||||  || |||||||||| |||||||||    
T  47097502 tatttcgttagtcaaaatagtctttaacactaaaatactttattaatattgtcatattagtcctttaatatacttatttattgtca 47097417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 474
Target Start/End: Complemental strand, 51234508 - 51234396
Alignment:
Q  363 aaatttgaaaatagtc-cttattatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatact 461  Q
    |||||| ||||||||| || | |||| ||||| ||| |||||||||||||| |  |||||||  ||| |||||||||||||||||   ||||||||||||    
T  51234508 aaattttaaaatagtctctaactatgcatttcgttagtcaaaatagtctctgatgttaaaatgttttattaatattgtcatattaaactttcaatatact 51234409  T
Q  462 tacttattgtcat 474  Q
    |||||||||||||    
T  51234408 tacttattgtcat 51234396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 473
Target Start/End: Complemental strand, 312777 - 312695
Alignment:
Q  391 ttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||||| ||||||||||| |||||||| ||||| ||  || ||||||||||||||||  ||||||||||||| |||||||||    
T  312777 ttcattagtcaaaatagtccctaacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttattgtca 312695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 476
Target Start/End: Complemental strand, 48973448 - 48973334
Alignment:
Q  363 aaatttgaaaatagtcctt-attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatact 461  Q
    |||||| |||||||||||| ||| || | ||||||||||||||||||   | |  |||||||  ||  |||||||||||||||||||  |||||||||||    
T  48973448 aaatttcaaaatagtccttgattgtgcaattcattaatcaaaatagttcttgatgttaaaatgcttcattaatattgtcatattagtccttcaatatact 48973349  T
Q  462 tacttattgtcatat 476  Q
    |||||||||||||||    
T  48973348 tacttattgtcatat 48973334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 471
Target Start/End: Complemental strand, 36409727 - 36409656
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgt 471  Q
    |||||||||||| | | |||||||||| | ||||||||||||||||||||  |||||||||||||||||||||    
T  36409727 tcaaaatagtct-tgagattaaaataactggttaatattgtcatattagtccttcaatatacttacttattgt 36409656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 471
Target Start/End: Complemental strand, 36423893 - 36423822
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgt 471  Q
    |||||||||||| | | |||||||||| | ||||||||||||||||||||  |||||||||||||||||||||    
T  36423893 tcaaaatagtct-tgagattaaaataactggttaatattgtcatattagtccttcaatatacttacttattgt 36423822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 474
Target Start/End: Complemental strand, 26499469 - 26499394
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    |||||||||||  ||||||||||||| ||  |||||||||||||||||||  ||||||||||||||| ||| ||||    
T  26499469 tcaaaatagtccgtaacattaaaatacttcattaatattgtcatattagtcattcaatatacttactaattatcat 26499394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 473
Target Start/End: Complemental strand, 6552603 - 6552521
Alignment:
Q  391 ttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||||| ||||||||||| |||||||| ||||| ||  || ||||||||| ||||||  ||||||||||||| |||||||||    
T  6552603 ttcattagtcaaaatagtccctaacattcaaatacttcattgatattgtcacattagtccttcaatatacttatttattgtca 6552521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 473
Target Start/End: Complemental strand, 6553003 - 6552921
Alignment:
Q  391 ttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||||| |||||||||||||||||||| ||||| ||  || ||||||||  ||||||  ||||||||||||| |||||||||    
T  6553003 ttcattagtcaaaatagtctctaacattcaaatacttcattgatattgtctcattagtccttcaatatacttatttattgtca 6552921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 414 - 476
Target Start/End: Original strand, 9297464 - 9297526
Alignment:
Q  414 acattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||||| |||||||||||||||||||||||  || |||||||||| ||||| ||||||    
T  9297464 acattaaaatactttgttaatattgtcatattagtcattaaatatacttatttattatcatat 9297526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 473
Target Start/End: Complemental strand, 40407633 - 40407572
Alignment:
Q  412 taacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||||||||||||||||||| |||||||  | ||| |||||| |||||||||||||    
T  40407633 taacattaaaataatttgttaatattatcatattgatcttttaatataattacttattgtca 40407572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 401 - 468
Target Start/End: Original strand, 9057354 - 9057421
Alignment:
Q  401 aaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttat 468  Q
    |||||||||||| | | |||||   ||| |||||||||||||||||||| ||||||||||||||||||    
T  9057354 aaaatagtctcttatactaaaacgttttattaatattgtcatattagttattcaatatacttacttat 9057421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 12387973 - 12388039
Alignment:
Q  131 cactacaagaaaaatgccatatacctaaggtggtttatagtgaccgacaaaaaactgtaggtattga 197  Q
    ||||||||||| ||||||||||||||| ||  |||||||| ||| ||| ||||||||||| ||||||    
T  12387973 cactacaagaataatgccatatacctacggatgtttatagcgacagacgaaaaactgtagctattga 12388039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 477
Target Start/End: Original strand, 14810274 - 14810352
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    |||||||||||| | | ||||| ||| || |||||||||||||| |||||| ||||||| ||||| ||||| |||||||    
T  14810274 tcaaaatagtctttgatattaatatatttcgttaatattgtcatgttagttcttcaatagacttagttattttcatatt 14810352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 475
Target Start/End: Original strand, 33860293 - 33860339
Alignment:
Q  429 gttaatattgtcatattagtttttcaatatacttacttattgtcata 475  Q
    ||||||||||| |||||||| |||||||||||| |||||||||||||    
T  33860293 gttaatattgtgatattagtctttcaatatactaacttattgtcata 33860339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 474
Target Start/End: Original strand, 31903367 - 31903424
Alignment:
Q  417 ttaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    |||||||||||  ||| ||||||||||| |||  ||||||||||||||||||||||||    
T  31903367 ttaaaataattcattagtattgtcatatcagtccttcaatatacttacttattgtcat 31903424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 463
Target Start/End: Complemental strand, 4161891 - 4161827
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatactta 463  Q
    |||||||||||| | | ||||||||  ||  |||||||||||||||||||| |||||||||||||    
T  4161891 tcaaaatagtctatgatattaaaatgtttcattaatattgtcatattagttcttcaatatactta 4161827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 423
Target Start/End: Complemental strand, 11840142 - 11840018
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaa 398  Q
    ||||||||||||||||||  ||||||||||||  ||||||  |||| | |||| |||||||  |||||| |||||||||| | ||| || | ||  ||||    
T  11840142 ggtaatagtcattttggtccctgaatgcgtaaggagtagtcgcaataggccctcaatgtatcaaaatttcaaaatagtccctgattgtgcactttgttaa 11840043  T
Q  399 tcaaaatagtctctaacattaaaat 423  Q
    ||||||||||| || || |||||||    
T  11840042 tcaaaatagtccctgacgttaaaat 11840018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 446
Target Start/End: Complemental strand, 14945629 - 14945565
Alignment:
Q  382 attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatatta 446  Q
    ||||||||||  |||| |||||||||||  | |||||||||| ||| ||||||||||||||||||    
T  14945629 attatgtattatattagtcaaaatagtcatttacattaaaatgattagttaatattgtcatatta 14945565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 426
Target Start/End: Original strand, 12034380 - 12034507
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtc-cttattatgtatttcattaa 398  Q
    ||||||||||||||||||  |||||||  |||| |||||| ||||| | |||| |||||||  |||||  ||||||||| || ||| | || ||  |||     
T  12034380 ggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctgattgtatactttgttag 12034479  T
Q  399 tcaaaatagtctctaacattaaaataat 426  Q
    |||||||||||||| ||| |||||||||    
T  12034480 tcaaaatagtctctgacactaaaataat 12034507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 26499277 - 26499344
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatt 367  Q
    ||||||||||||||||||| ||||||| |||| ||||||| |||||   | ||||||||||| |||||    
T  26499277 ggtaatagtcattttggttcctgaatgtgtaaaaagtagtcacaataatctcttaatgtattaaaatt 26499344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 476
Target Start/End: Complemental strand, 50384588 - 50384545
Alignment:
Q  433 atattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||||||| || |||||||||||||||||||| ||||||    
T  50384588 atattgtcatattcgtctttcaatatacttacttattatcatat 50384545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 476
Target Start/End: Complemental strand, 51003642 - 51003583
Alignment:
Q  417 ttaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||| || |||||||||| ||||||| | | |||||||||||||||||||| ||||    
T  51003642 ttaaaatatttggttaatattggcatattaatctctcaatatacttacttattgtaatat 51003583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 8678051 - 8678085
Alignment:
Q  437 tgtcatattagtttttcaatatacttacttattgt 471  Q
    |||||||| ||||||||||||||||||||||||||    
T  8678051 tgtcatatcagtttttcaatatacttacttattgt 8678085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 378
Target Start/End: Original strand, 17381282 - 17381360
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtc 378  Q
    ||||||||||||||||||| ||||||| ||| |||||||| ||||| | || | |||||||  |||||| |||| ||||    
T  17381282 ggtaatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaaatttcaaaaaagtc 17381360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 476
Target Start/End: Complemental strand, 39331143 - 39331097
Alignment:
Q  430 ttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||| |||| ||| |||||||||||||| ||||||||||||    
T  39331143 ttaatattgttatatcagtctttcaatatacttatttattgtcatat 39331097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 442
Target Start/End: Original strand, 1758351 - 1758440
Alignment:
Q  354 aatgtattgaaatttgaaaatagtc-cttattatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcat 442  Q
    |||||||  |||||| ||||||||  |||||| |||| ||| ||| |||||||||||  | ||||||||||| || ||||||||||||||    
T  1758351 aatgtatcaaaatttcaaaatagtttcttattgtgtacttcgttagtcaaaatagtccttgacattaaaatacttcgttaatattgtcat 1758440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 40836729 - 40836806
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||| | | ||||||||  ||  ||||||||||||||  ||| |||||||| ||||||||||| ||||||    
T  40836729 tcaaaatagtctgtgatattaaaatgcttcattaatattgtcataccagtctttcaatacacttacttattatcatat 40836806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 426
Target Start/End: Original strand, 2161722 - 2161825
Alignment:
Q  323 aatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtc-cttattatgtatttcattaatcaaaatagtctctaacattaaa 421  Q
    |||| |||| ||||||| ||||| |  |||||||||||  |||||| |||| |||| || |||||| |||||||||  ||||||||||||| |||||| |    
T  2161722 aatgtgtaagaagtagtcacaattgttccttaatgtatc-aaatttaaaaacagtctctgattatgcatttcattagccaaaatagtctctgacattata 2161820  T
Q  422 ataat 426  Q
    |||||    
T  2161821 ataat 2161825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 474
Target Start/End: Original strand, 7616900 - 7616944
Alignment:
Q  430 ttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    |||||||| ||||||||||  ||||||||||||| ||||||||||    
T  7616900 ttaatattatcatattagtcattcaatatacttatttattgtcat 7616944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 477
Target Start/End: Original strand, 33360914 - 33360990
Alignment:
Q  401 aaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    ||||| |||||| || |||||||| |   |||||||||||||||||||  || ||  ||||||||||||||||||||    
T  33360914 aaaattgtctcttacgttaaaatattgcattaatattgtcatattagtcatttaacgtacttacttattgtcatatt 33360990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 46805025 - 46804957
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttactta 467  Q
    ||||||||||| || | ||||||||| ||  |||||||| |||| | |||| |||||||||||||||||    
T  46805025 tcaaaatagtccctgatattaaaatatttcattaatattatcatgtcagttcttcaatatacttactta 46804957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 473
Target Start/End: Complemental strand, 48828097 - 48828025
Alignment:
Q  401 aaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||||||| |||| || ||||||  |  |||||||||||||||||    |||||||||||||||||||||||    
T  48828097 aaaatagtccctaatataaaaatacgtcattaatattgtcatattaacccttcaatatacttacttattgtca 48828025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 300 - 469
Target Start/End: Complemental strand, 10067829 - 10067659
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtc-cttattatgtatttcattaa 398  Q
    ||||||||||||||| || | |||||| ||||||||||   ||||| | | || ||||||| ||||||| ||||||||| || ||| |||||||  ||||    
T  10067829 ggtaatagtcattttagtctttgaatgtgtaacaagtaaccacaatagtctctcaatgtatcgaaattttaaaatagtctctgattgtgtattttgttaa 10067730  T
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||||||||||||||    
T  10067729 tcaaaatagtctctgacattaaaatactttgttaatattgtcatattagtcattcaatatacttacttatt 10067659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 399 - 469
Target Start/End: Complemental strand, 25085093 - 25085023
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  25085093 tcaaaatagtctttaacattaaaataatttgttaatattgtcatattattctttcaatatacttacttatt 25085023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 399 - 476
Target Start/End: Complemental strand, 16431665 - 16431588
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||  ||||||||||||||||||||||||||    
T  16431665 tcaaaatagtctctaacattaaaataattcactaatattgtcatattagtcattcaatatacttacttattgtcatat 16431588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 697596 - 697489
Alignment:
Q  130 tcactacaagaaaaatgccatatacctaaggtggtttatagtgaccgacaaaaaactgtaggtattgataaattttacttacggaaggagccgtagatat 229  Q
    |||||||||||||| ||||||||||||| || ||||||||||||| ||| |||| |||||||||||||||  |||||| ||||||||  ||||||| |||    
T  697596 tcactacaagaaaattgccatatacctacggaggtttatagtgacggacgaaaatctgtaggtattgatatgttttacctacggaagtggccgtaggtat 697497  T
Q  230 agatatct 237  Q
    || |||||    
T  697496 aggtatct 697489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 300 - 474
Target Start/End: Complemental strand, 9307571 - 9307397
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaa 398  Q
    |||| |||||||||| ||  ||||||| ||||| |||||||| |||||  ||  ||||||||||||||| |||||||||| | | | || ||||||||      
T  9307571 ggtactagtcattttagtccctgaatgtgtaacgagtagttataatggtaccccaatgtattgaaattttaaaatagtccctgaatgtgcatttcatttg 9307472  T
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    ||||| ||||| || ||||||||||||||  |||| ||||||||||||||  ||||||||||||||||||| ||||    
T  9307471 tcaaa-tagtccctgacattaaaataattcattaacattgtcatattagtccttcaatatacttacttattttcat 9307397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 301 - 444
Target Start/End: Original strand, 10219536 - 10219680
Alignment:
Q  301 gtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagt-ccttattatgtatttcattaat 399  Q
    |||||||||||||||||  ||||||| ||||| |||||  ||||| | |||||||||| | ||||||| |||||||| ||| ||| || | ||  ||| |    
T  10219536 gtaatagtcattttggtccctgaatgtgtaacgagtagccacaatagtcccttaatgtgtcgaaatttcaaaatagttcctgattgtgcactttgttagt 10219635  T
Q  400 caaaatagtctctaacattaaaataatttgttaatattgtcatat 444  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||    
T  10219636 caaaatagtctctgacgttaaaataattcgttaatattgtcatat 10219680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 26293559 - 26293485
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||||  ||||||||||||| |||||||||||| ||||||||||  |||||||||| ||||||||||||    
T  26293559 tcaaaatagtccttaacattaaaatactttgttaatattatcatattagtcattcaatatacatacttattgtca 26293485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 352 - 476
Target Start/End: Complemental strand, 28995591 - 28995466
Alignment:
Q  352 ttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagttt 450  Q
    |||| |||||||||||| |||||| |  || ||||| || ||| ||| |||||||||| ||||||||||||||| || ||||||||| |||| ||||| |    
T  28995591 ttaacgtattgaaattttaaaataatatttgattatttacttcgttagtcaaaatagtttctaacattaaaatacttcgttaatattttcatgttagtct 28995492  T
Q  451 ttcaatatacttacttattgtcatat 476  Q
    || || |||||||||||||| |||||    
T  28995491 ttaaacatacttacttattggcatat 28995466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 473
Target Start/End: Complemental strand, 17848846 - 17848762
Alignment:
Q  389 atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||| ||| |||||||||||| ||||||||||||| || |||||||||| |||||||||  ||  |||||||||||||||||||    
T  17848846 atttcgttagtcaaaatagtctttaacattaaaatacttcgttaatattgacatattagtcatttgatatacttacttattgtca 17848762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 23271187 - 23271275
Alignment:
Q  128 tatcactacaagaaaaatgccatatacctaaggtggtttatagtgaccgacaaaaaactgtaggtattgataaattttacttacggaag 216  Q
    |||| ||||||||||| ||||||||||||  || ||||||||||||| ||| |||| | |||||||||||||| |||||| ||||||||    
T  23271187 tatccctacaagaaaattgccatataccttcggaggtttatagtgacggacgaaaatccgtaggtattgataagttttacctacggaag 23271275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 475
Target Start/End: Original strand, 31141969 - 31142090
Alignment:
Q  354 aatgtattgaaatttgaaaatagtccttattatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttc 453  Q
    ||||||| ||| ||| |||| |||||||  |||| | |||||||||||| ||||||  | | ||||||||| ||  ||||||||||||||| |||  |||    
T  31141969 aatgtatcgaactttcaaaaaagtccttgatatggacttcattaatcaatatagtccatgatattaaaatacttcattaatattgtcatatcagtacttc 31142068  T
Q  454 aatatacttacttattgtcata 475  Q
    |||||| |||||||||||||||    
T  31142069 aatatatttacttattgtcata 31142090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 399 - 469
Target Start/End: Complemental strand, 6525028 - 6524958
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    |||||||||||  ||||||||||||| ||  |||||||||||||||||||  ||||||||| |||||||||    
T  6525028 tcaaaatagtccgtaacattaaaatacttcattaatattgtcatattagtccttcaatatatttacttatt 6524958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 17769748 - 17769850
Alignment:
Q  130 tcactacaagaaaaatgccatatacctaaggtggtttatagtgaccgacaaaaaactgtaggtattgataaattttacttacggaaggagccgtagatat 229  Q
    |||||||||||||| ||||||||| ||| || ||||| ||||||| ||| |||||| |||||||||||  |  ||||| ||||||||  ||||||| |||    
T  17769748 tcactacaagaaaattgccatatatctacggaggtttgtagtgacggacgaaaaaccgtaggtattgaacagctttacctacggaagtggccgtaggtat 17769847  T
Q  230 aga 232  Q
    |||    
T  17769848 aga 17769850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 477
Target Start/End: Complemental strand, 29927735 - 29927653
Alignment:
Q  395 ttaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    ||||| |||||||| | | | ||||||||  |||||| ||||||||||||||||| ||||||| ||||| |||||||||||||    
T  29927735 ttaataaaaatagtattttatattaaaatgttttgttgatattgtcatattagttcttcaataaacttatttattgtcatatt 29927653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 419 - 469
Target Start/End: Complemental strand, 33806904 - 33806854
Alignment:
Q  419 aaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    |||||| ||||||||||||||||||||||| |||||||||||||| |||||    
T  33806904 aaaatattttgttaatattgtcatattagtctttcaatatacttaattatt 33806854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 463
Target Start/End: Complemental strand, 21021118 - 21021037
Alignment:
Q  382 attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatactta 463  Q
    |||||| |||| |||| |||||||||||  ||||||||||||| || |||| |||| ||||||||||  |||||||||||||    
T  21021118 attatgcattttattagtcaaaatagtcattaacattaaaatatttcgttattattatcatattagtccttcaatatactta 21021037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 476
Target Start/End: Complemental strand, 7792295 - 7792207
Alignment:
Q  388 tatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||| ||||||| |||||| | ||  ||||||||| ||| ||||||||||||||||| |||||||||||| ||| || || ||||||    
T  7792295 tatttcgttaatcagaatagtttttataattaaaatattttattaatattgtcatattattttttcaatatatttatttgttttcatat 7792207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 401 - 476
Target Start/End: Complemental strand, 31315289 - 31315214
Alignment:
Q  401 aaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||| |||| ||||||||||| ||  || |||||||||||||| | |||||||||||||| ||||| ||||||    
T  31315289 aaaatagactcttacattaaaatatttctttcatattgtcatattaatatttcaatatacttatttattatcatat 31315214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 476
Target Start/End: Original strand, 18354559 - 18354640
Alignment:
Q  395 ttaatcaaaatagtctctaacat-taaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||||| ||||| || |||| || ||||||||||||||||||| |||  |||||||||| || ||||||||||||    
T  18354559 ttaatcaaaatagtatctaatatataaattattttgttaatattgtcatataagtcattcaatataccta-ttattgtcatat 18354640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 18129947 - 18130024
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||||| ||  |||||||||||||   ||||||||||||||||||  ||||||||| || |||||| ||||||    
T  18129947 tcaaaatagtccctgtcattaaaataattgtgtaatattgtcatattagtccttcaatataattgcttattttcatat 18130024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 448
Target Start/End: Original strand, 22260475 - 22260511
Alignment:
Q  412 taacattaaaataatttgttaatattgtcatattagt 448  Q
    ||||||||||| |||||||||||||||||||||||||    
T  22260475 taacattaaaacaatttgttaatattgtcatattagt 22260511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 476
Target Start/End: Original strand, 24285090 - 24285150
Alignment:
Q  416 attaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||| || ||||||||||||||||||||| |  || |||||||||||||||| ||||||    
T  24285090 attaaactattttgttaatattgtcatattaatcatttaatatacttacttattatcatat 24285150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 476
Target Start/End: Complemental strand, 9436730 - 9436671
Alignment:
Q  417 ttaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||| |||||||||||||||||||||||    ||||||||||| ||||| ||||||    
T  9436730 ttaaaatattttgttaatattgtcatattagtcccgcaatatacttatttattatcatat 9436671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 474
Target Start/End: Complemental strand, 2044437 - 2044391
Alignment:
Q  428 tgttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    |||||||||| ||||||||| || |||||||||||| ||||||||||    
T  2044437 tgttaatattatcatattagattctcaatatacttatttattgtcat 2044391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 473
Target Start/End: Complemental strand, 21237335 - 21237273
Alignment:
Q  411 ctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||||||| ||  |||| |||||||||||||   ||||||||||||| |||||||||    
T  21237335 ctaacattaaaatacttcattaacattgtcatattagccgttcaatatacttagttattgtca 21237273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 3314737 - 3314797
Alignment:
Q  415 cattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||  ||||||||||||||||||| || |  |||||||||||||||||||| ||||    
T  3314737 cattaaaatgttttgttaatattgtcatatcag-tcctcaatatacttacttattgttatat 3314797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 474
Target Start/End: Original strand, 9045386 - 9045459
Alignment:
Q  401 aaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    |||||||| ||||||||||||||   | ||||||| |||||||||| || |||||| || ||| ||||||||||    
T  9045386 aaaatagtttctaacattaaaatgtatcgttaataatgtcatattacttcttcaatgtatttatttattgtcat 9045459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 23887605 - 23887666
Alignment:
Q  415 cattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||||   ||||||||||||||||||  ||||||||| || |||||| ||||||    
T  23887605 cattaaaataattgtgtaatattgtcatattagtccttcaatataattgcttattttcatat 23887666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 33806700 - 33806773
Alignment:
Q  352 ttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatcaaaatagtctctaacattaaaata 424  Q
    ||||||||| ||||||  ||||||||| || |||||||| ||  ||| ||||||||||||||||| ||||||||    
T  33806700 ttaatgtatcgaaattctaaaatagtcattgattatgtactttgttagtcaaaatagtctctaacgttaaaata 33806773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 301 - 476
Target Start/End: Complemental strand, 917265 - 917089
Alignment:
Q  301 gtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaat 399  Q
    |||||||||||||||||| ||||||| ||||  | |||| ||||| | |||| ||||||| ||||||| ||||||||| || ||| |  | || ||| ||    
T  917265 gtaatagtcattttggttcctgaatgtgtaaatattagtcacaatcgtccctcaatgtatcgaaattttaaaatagtctttgattgtacactttatttat 917166  T
Q  400 caaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||||||||  ||||||||| ||| || |||||||||    
T  917165 caaaatagtctctcacaataaaatattttgttaatattgtcatattagtcattcaatatatttattttttgtcatat 917089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 11534974 - 11534900
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  11534974 tcaacatagtctctaacattaaaataatttgttaatattgtcatattaatcttttaatatacttacttattgtca 11534900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 11498034 - 11497960
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  11498034 tcaacatagtccctaacattaaaataatttgttaatattgtcatattaatcttttaatatacttacttattgtca 11497960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 11505390 - 11505316
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||    
T  11505390 tcaacatagtccctaacattaaaataatttgttaatattgtcgtattaatcttttaatatacttacttattgtca 11505316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 11512784 - 11512710
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||    
T  11512784 tcaacatagtccctaacattaaaataatttgttaatattgtcgtattaatcttttaatatacttacttattgtca 11512710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 11520160 - 11520086
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||    
T  11520160 tcaacatagtccctaacattaaaataatttgttaatattgtcgtattaatcttttaatatacttacttattgtca 11520086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 11527568 - 11527494
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||    
T  11527568 tcaacatagtccctaacattaaaataatttgttaatattgtcgtattaatcttttaatatacttacttattgtca 11527494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 476
Target Start/End: Original strand, 3599844 - 3599971
Alignment:
Q  351 cttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatatta-gt 448  Q
    |||||||||||||||||| ||||||||  || ||| |||||||  ||||||||||| |||||| || |||||||| || || ||||||||||||||| ||    
T  3599844 cttaatgtattgaaattttaaaatagtgtttgattgtgtattttgttaatcaaaatggtctctcacgttaaaatatttcgtaaatattgtcatattatgt 3599943  T
Q  449 ttttcaatatacttacttattgtcatat 476  Q
     |||||| ||| ||| ||||||||||||    
T  3599944 ctttcaacatatttatttattgtcatat 3599971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 469
Target Start/End: Original strand, 27769868 - 27769938
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    |||| |||||| |||||||||||||| ||| |||||||||||||||||  | |||||||||||||||||||    
T  27769868 tcaagatagtcactaacattaaaatattttattaatattgtcatattaactcttcaatatacttacttatt 27769938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 463
Target Start/End: Original strand, 42420403 - 42420461
Alignment:
Q  405 tagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatactta 463  Q
    ||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  42420403 tagtcactgacattaaaataatttgttaatattgtcatattagtattttaatatactta 42420461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 444
Target Start/End: Original strand, 7756956 - 7757045
Alignment:
Q  356 tgtattgaaatttgaaaatagtccttattatgt-atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatat 444  Q
    ||||||||||||| ||||||||||||| |   | ||||  ||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  7756956 tgtattgaaattttaaaatagtccttaatcgttgattttgttagtcaaaatagtctctaacattaaaattgtttgttaatattgtcatat 7757045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 8814239 - 8814178
Alignment:
Q  416 attaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    ||||||||| ||| ||||||||||||||||||| |  |||||||||||||||||||||||||    
T  8814239 attaaaatatttttttaatattgtcatattagtctcccaatatacttacttattgtcatatt 8814178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 476
Target Start/End: Complemental strand, 8206400 - 8206224
Alignment:
Q  301 gtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaat 399  Q
    ||||||||||||||| |   |||||| |||| ||||||| |  || | || ||||||||| ||||||| | |||||||| | | | || | ||||||| |    
T  8206400 gtaatagtcattttgatcattgaatgtgtaataagtagtcatgatagtcctttaatgtatcgaaattttataatagtccctgaatgtgcacttcattagt 8206301  T
Q  400 caaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||||  | |||  |||||||||  ||||||||||||||||| |  ||||||||||||||||||| ||||||    
T  8206300 caaaatagtccttgacaacaaaataattcattaatattgtcatattaatccttcaatatacttacttattatcatat 8206224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 473
Target Start/End: Complemental strand, 9023431 - 9023352
Alignment:
Q  394 attaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||| ||||||||||| |||||||| ||||| ||  || ||||||||||||||||  ||||||||||||| |||||||||    
T  9023431 attagtcaaaatagtccctaacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttattgtca 9023352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 475
Target Start/End: Complemental strand, 29502416 - 29502353
Alignment:
Q  412 taacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcata 475  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||||||  ||||| |||||    
T  29502416 taacattaaaatatttcgttaatattgtcgtattagtttttcaatatacttgtttattttcata 29502353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 472
Target Start/End: Complemental strand, 6217749 - 6217577
Alignment:
Q  302 taatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatc 400  Q
    ||||||||||||||||   |||||| ||| | | |||  ||||| | |||| |||||||  |||||| |||||||||| | |||||| | ||| ||| ||    
T  6217749 taatagtcattttggtccatgaatgtgtagcgaatagccacaatagtccctcaatgtatcaaaatttcaaaatagtccatgattatgcacttcgttagtc 6217650  T
Q  401 aaaatagtctctaacatt-aaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtc 472  Q
    |||||||||| | ||||| |||||| |  |||| |||||||||||||||  || |||||||||||||| ||||    
T  6217649 aaaatagtctttgacatttaaaatattaggttagtattgtcatattagtcctttaatatacttacttagtgtc 6217577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 399 - 466
Target Start/End: Original strand, 9955361 - 9955428
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttactt 466  Q
    |||||||||| ||||||||||||||||| || ||||||| |||||| ||| | | |||||||||||||    
T  9955361 tcaaaatagtttctaacattaaaataatctgctaatattttcatatcagtctcttaatatacttactt 9955428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 30050464 - 30050547
Alignment:
Q  131 cactacaagaaaaatgccatatacctaaggtggtttatagtgaccgacaaaaaactgtaggtattgataaattttacttacggaag 216  Q
    ||||||||||||| ||||||||| ||| || ||||||||||||| ||| |||| | ||||||||  |||| |||||| ||||||||    
T  30050464 cactacaagaaaattgccatatatctatggaggtttatagtgacggactaaaatccgtaggtat--ataagttttacctacggaag 30050547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 476
Target Start/End: Original strand, 26675054 - 26675178
Alignment:
Q  352 ttaatgtattgaaatttgaaaatagtc-cttattatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagttt 450  Q
    |||||||||  |||||| |||||| || ||||||||||||||  ||| |||||||| |   |||  |||||||| ||  ||||||||||||||| |||      
T  26675054 ttaatgtatcaaaattttaaaataatctcttattatgtattttgttagtcaaaataattcataatgttaaaatatttcattaatattgtcatat-agtcc 26675152  T
Q  451 ttcaatatacttacttattgtcatat 476  Q
    ||||||||||||| ||||||||||||    
T  26675153 ttcaatatacttatttattgtcatat 26675178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 476
Target Start/End: Original strand, 26946662 - 26946786
Alignment:
Q  352 ttaatgtattgaaatttgaaaatagtc-cttattatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagttt 450  Q
    |||||||||  |||||| |||||| || ||||||||||||||  ||| |||||||| |   |||  |||||||| ||  ||||||||||||||| |||      
T  26946662 ttaatgtatcaaaattttaaaataatctcttattatgtattttgttagtcaaaataattcataatgttaaaatatttcattaatattgtcatat-agtcc 26946760  T
Q  451 ttcaatatacttacttattgtcatat 476  Q
    ||||||||||||| ||||||||||||    
T  26946761 ttcaatatacttatttattgtcatat 26946786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 476
Target Start/End: Complemental strand, 37181323 - 37181246
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||| |||||| | |||||||  || ||||||||||||||||| |||  | |||||||||||| ||||||||||    
T  37181323 tcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttactaattgtcatat 37181246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 479
Target Start/End: Original strand, 7313982 - 7314062
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatattct 479  Q
    ||||||||||| || | ||| ||||| || ||||||||||||||||| ||   | |||||||||| |||||||||||||||    
T  7313982 tcaaaatagtccctcatatttaaatatttcgttaatattgtcatattggtcccttaatatacttatttattgtcatattct 7314062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 476
Target Start/End: Complemental strand, 14460126 - 14460083
Alignment:
Q  433 atattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||    
T  14460126 atattgtcatattagtccttcaatatatttacttattgtcatat 14460083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 29714789 - 29714747
Alignment:
Q  303 aatagtcattttggtttctgaatgcgtaacaagtagttacaat 345  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||    
T  29714789 aatagtcattttggtttttgaatgtgtaaccagtagttacaat 29714747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 477
Target Start/End: Original strand, 18004500 - 18004596
Alignment:
Q  380 ttattatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    ||||| |||| ||| |||||||||||||| | | |||||||||| |||  |||||| | |||||| |||| ||||||| | ||| |||||||||||||    
T  18004500 ttattgtgtacttcgttaatcaaaatagttttttacattaaaatgattcattaatactatcatatcagttcttcaatacattta-ttattgtcatatt 18004596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 27001214 - 27001291
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||| | |  |||||||| ||  |||||||||||||||||     |||||||||||||||||||||||||    
T  27001214 tcaaaatagtctttgatgttaaaatacttcattaatattgtcatattaccccgtcaatatacttacttattgtcatat 27001291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 32517917 - 32517994
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||| | ||||| |||| ||| |||||||||||||||| ||| | ||||| || || |||||||| ||||    
T  32517917 tcaaaatagtcttttacatttaaattattcgttaatattgtcatatcagtctatcaatttatttccttattgttatat 32517994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 476
Target Start/End: Complemental strand, 21602278 - 21602107
Alignment:
Q  306 agtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatcaaaa 404  Q
    ||||||||||||   |||||| | |||||||||  | ||||| |||| ||| ||| ||||||| ||||||||||   |||  | | ||||||||||||||    
T  21602278 agtcattttggtccttgaatgtgcaacaagtagccataatggtccctcaatatatcgaaatttcaaaatagtccccgattgcgcacttcattaatcaaaa 21602179  T
Q  405 tagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||| || |||||||||||||| ||||||||||||||||||||  ||||||||||| ||||||||| ||||    
T  21602178 tagtccctgacattaaaataattcgttaatattgtcatattagtccttcaatatactaacttattgttatat 21602107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 3662414 - 3662491
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  3662414 tcaaattagtccctagcattaaaataatttgttaatattgtcatattagttctttaatatacttacttattgtcatat 3662491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 474
Target Start/End: Complemental strand, 7681069 - 7680943
Alignment:
Q  349 cccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattag 447  Q
    |||| |||||||  |||||| ||||||||  || ||| || ||||| ||| ||||||| ||| ||||||||||||||||| |||||||||||||| ||||    
T  7681069 ccctcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtcaaaatcgtccctaacattaaaataattcgttaatattgtcatcttag 7680970  T
Q  448 tttttcaatatacttacttattgtcat 474  Q
    | ||||||||| |||||||||||||||    
T  7680969 tatttcaatatccttacttattgtcat 7680943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 469
Target Start/End: Complemental strand, 33508741 - 33508620
Alignment:
Q  349 cccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattag 447  Q
    |||||||||||| ||||||| ||||||||  || | | || |||||||||||||||||| ||||| ||||||||||| ||  |||||||| || ||||||    
T  33508741 cccttaatgtatcgaaatttcaaaatagttattgagtgtgcatttcattaatcaaaataatctctgacattaaaatacttcattaatattatcgtattag 33508642  T
Q  448 tttttcaatatacttacttatt 469  Q
    |  |||||||||||||||||||    
T  33508641 tccttcaatatacttacttatt 33508620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 412 - 473
Target Start/End: Complemental strand, 41303144 - 41303083
Alignment:
Q  412 taacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  41303144 taacattaaaataatttgttaatattgtcatattagtcttttaatatacttaattattgtca 41303083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 471
Target Start/End: Original strand, 6393782 - 6393952
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaa 398  Q
    ||||||||||||||||||   |||||| |||||||||||  | ||||| || | ||||||| ||||||| |||||||| | | ||| || | || ||||     
T  6393782 ggtaatagtcattttggtca-tgaatgtgtaacaagtagcaataatggtcc-tcaatgtatcgaaatttcaaaatagttcatgattgtgcactttattag 6393879  T
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgt 471  Q
    ||||||||||  |||||||||||||| ||  |||||||| ||||||||||| |||||||||||||| ||||||    
T  6393880 tcaaaatagttcctaacattaaaatagttctttaatattatcatattagttcttcaatatacttacatattgt 6393952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 363 - 476
Target Start/End: Complemental strand, 3093996 - 3093882
Alignment:
Q  363 aaatttgaaaatagtcctta-ttatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatact 461  Q
    |||||| ||||||||| ||| || | |||| | ||| |||||||| ||| ||||||||||||  | |||||||| ||||||||||||||||||||||| |    
T  3093996 aaattttaaaatagtctttaattttatattacgttagtcaaaataatctttaacattaaaatgttctgttaatactgtcatattagtttttcaatatagt 3093897  T
Q  462 tacttattgtcatat 476  Q
    || ||||||||||||    
T  3093896 tatttattgtcatat 3093882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 389 - 474
Target Start/End: Complemental strand, 26018772 - 26018687
Alignment:
Q  389 atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    ||||| ||| |||||||||||| | ||||||||||| || ||||| ||||| ||||||||  ||||||||||||||||||||||||    
T  26018772 atttctttagtcaaaatagtctatgacattaaaatagttcgttaacattgttatattagtcattcaatatacttacttattgtcat 26018687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 473
Target Start/End: Complemental strand, 1249295 - 1249211
Alignment:
Q  389 atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||| ||| |||||||| ||| ||||||||||||| |||||||||| |||||||| |||  ||||||||| |||||||||||||    
T  1249295 atttcgttagtcaaaataatctataacattaaaatattttgttaatactgtcatatcagtacttcaatatatttacttattgtca 1249211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 474
Target Start/End: Original strand, 21600407 - 21600575
Alignment:
Q  307 gtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatcaaaat 405  Q
    |||| ||| ||||||||||| | ||  ||| || ||||| | ||||||||||||  |||||| ||||||||| || ||| || ||||| ||||| ||| |    
T  21600407 gtcacttttgtttctgaatgtgcaatgagttgtcacaatagtcccttaatgtatcaaaattttaaaatagtcattgattgtgcatttcgttaataaaatt 21600506  T
Q  406 agtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    |||| || |  |||||||| ||  |||||||||||||||| ||  ||||||||||||||||||||||||    
T  21600507 agtcactgatgttaaaatatttcattaatattgtcatatttgtccttcaatatacttacttattgtcat 21600575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 21145467 - 21145544
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||||| || |||||||  || ||||||||| |||||||||| | |||||||||||||||| ||||||||    
T  21145467 tcaaaatagtctcttacgttaaaatgtttcgttaatattatcatattagtctctcaatatacttacttactgtcatat 21145544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 414 - 476
Target Start/End: Complemental strand, 3714984 - 3714923
Alignment:
Q  414 acattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||||||||||||||||| |||||| | ||| ||| |||||||||||||||||||    
T  3714984 acattaaaataatttgttaatattgtaatatta-tcttttaatgtacttacttattgtcatat 3714923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 399 - 465
Target Start/End: Complemental strand, 4586938 - 4586873
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttact 465  Q
    ||||||||||| | ||||||||||||||||| |||||||||||||||||| |||  |||||||||||    
T  4586938 tcaaaatagtccccaacattaaaataatttgctaatattgtcatattagtcttt-tatatacttact 4586873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 473
Target Start/End: Original strand, 36754657 - 36754739
Alignment:
Q  391 ttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||||| ||||||| ||| |||||||| ||||| ||  || ||||||||||||||||  ||||||||||||| |||||||||    
T  36754657 ttcattagtcaaaatggtccctaacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttattgtca 36754739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 7603991 - 7604067
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcata 475  Q
    |||||||||||||||| ||| ||||   |  ||||||||||||||||| | |||||||||| |||||||||||||||    
T  7603991 tcaaaatagtctctaatattgaaatgtctcattaatattgtcatattaatctttcaatatatttacttattgtcata 7604067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 476
Target Start/End: Original strand, 24018014 - 24018074
Alignment:
Q  416 attaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||| || ||||||||||||||||||||  |||||||||| |||| ||||||||||    
T  24018014 attaaaatatttcgttaatattgtcatattagtcattcaatatacatactaattgtcatat 24018074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 476
Target Start/End: Complemental strand, 16338324 - 16338265
Alignment:
Q  417 ttaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||  |||||||||||||||||||| ||   |||||||||||||||||||||||||    
T  16338324 ttaaaatgctttgttaatattgtcatatttgtccatcaatatacttacttattgtcatat 16338265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 469
Target Start/End: Complemental strand, 17488301 - 17488131
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaa 398  Q
    ||||| |||||||||| |  ||||||| |||||||||||| ||||| | |||| ||||||  ||||||| |||||||||||| ||| || |||   ||      
T  17488301 ggtaacagtcattttgctccctgaatgtgtaacaagtagtcacaatagtccctcaatgtagcgaaatttcaaaatagtccttgattgtgaattatgttgg 17488202  T
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    ||||||||| |  | |  |||||||  || |||||||| |||||||||||   ||||||||||||||||||    
T  17488201 tcaaaatagccatttatgttaaaatgtttcgttaatatcgtcatattagtccctcaatatacttacttatt 17488131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 427
Target Start/End: Original strand, 18080178 - 18080307
Alignment:
Q  298 gaggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatag-tccttattatgtatttcatt 396  Q
    |||| |||||||||||||||  || |||| ||||||| |||| ||||||| || | |||||||||||| ||| |||||| | ||  ||||| ||||| ||    
T  18080178 gaggcaatagtcattttggtccctaaatgtgtaacaaatagtcacaatggtccttcaatgtattgaaa-ttgtaaatagtttctagttatgcatttcgtt 18080276  T
Q  397 aatcaaaatagtctctaacattaaaataatt 427  Q
    | |||||||||| ||| |||| |||||||||    
T  18080277 agtcaaaatagtttctgacatcaaaataatt 18080307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 33590282 - 33590208
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||| || |||||||||||||| || ||||||||||||||||   || ||||||||| ||| |||||||||    
T  33590282 tcaaaataatccctaacattaaaatacttcgttaatattgtcatatcgattcttcaatataattaattattgtca 33590208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 430 - 475
Target Start/End: Original strand, 2987008 - 2987053
Alignment:
Q  430 ttaatattgtcatattagtttttcaatatacttacttattgtcata 475  Q
    |||||| | |||||||||| ||||||||||||||||||||||||||    
T  2987008 ttaatactatcatattagtctttcaatatacttacttattgtcata 2987053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 476
Target Start/End: Complemental strand, 10028622 - 10028545
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||||| || |||||||  ||||||||||| ||||||||| |  || |||||| || |||||||||||||    
T  10028622 tcaaaatagtctcttactttaaaatgctttgttaatatcgtcatattaatccttgaatatattttcttattgtcatat 10028545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 473
Target Start/End: Original strand, 42659934 - 42659975
Alignment:
Q  432 aatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  42659934 aatattgtcatattagtcattcaatatacttacttattgtca 42659975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 469
Target Start/End: Original strand, 4493034 - 4493114
Alignment:
Q  389 atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    |||| ||||||||||||||||  | ||||||||||| |||||||||||||   |||||||  ||||||||| ||| |||||    
T  4493034 attttattaatcaaaatagtcattgacattaaaatactttgttaatattgctttattagtccttcaatatatttatttatt 4493114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 377
Target Start/End: Complemental strand, 14524054 - 14523974
Alignment:
Q  297 tgaggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagt 377  Q
    |||||| |||| ||||||| | |||||||| |||||||||||| | ||| | |||||||||| | ||||||| ||||||||    
T  14524054 tgaggtgatagacattttgatctctgaatgtgtaacaagtagtcataatagtcccttaatgtgtcgaaatttcaaaatagt 14523974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 378
Target Start/End: Original strand, 4586748 - 4586826
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtc 378  Q
    ||||||||| |||||| |   |||||| ||||| |||||||||||| | | ||||||||||| |||||| |||||||||    
T  4586748 ggtaatagttattttgatccttgaatgtgtaacgagtagttacaatagtctcttaatgtattaaaattttaaaatagtc 4586826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 469
Target Start/End: Complemental strand, 10708667 - 10708549
Alignment:
Q  352 ttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagttt 450  Q
    |||||||||  |||||| ||||||||| || ||||| ||||   ||| |||||||| || |  || |||||||| |||||||||||| | |||||||||     
T  10708667 ttaatgtatataaattttaaaatagtctttgattatatattatgttagtcaaaataatcacctacgttaaaatattttgttaatattattatattagttc 10708568  T
Q  451 ttcaatatacttacttatt 469  Q
     |||||||||||| |||||    
T  10708567 ctcaatatacttaattatt 10708549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 9598096 - 9598056
Alignment:
Q  382 attatgtatttcattaatcaaaatagtctctaacattaaaa 422  Q
    |||||| | ||||||||||||||||||||||||| ||||||    
T  9598096 attatgcacttcattaatcaaaatagtctctaacgttaaaa 9598056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 43218722 - 43218833
Alignment:
Q  126 actatcactacaagaaaaatgccatatacctaaggtggtttatagtgaccgacaaaaaactgtaggtattgataaattttacttacggaaggagccgtag 225  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||| ||| |||| |||||||||||||||  |||||| ||||||||  |||||||    
T  43218722 actatcactacaagaaaattgccatatacctacggaggtttatagtgacggacgaaaatctgtaggtattgatatgttttacctacggaagtggccgtag 43218821  T
Q  226 atatagatatct 237  Q
     ||||| |||||    
T  43218822 gtataggtatct 43218833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 8062789 - 8062863
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  8062789 tcaaaatagtccataacattaaaataatttgttaatattgtcatattagtcttttaatatacttactcattgtca 8062863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 398 - 476
Target Start/End: Original strand, 34703725 - 34703803
Alignment:
Q  398 atcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||| ||||    
T  34703725 atcaaaatagtctctaactttaaaatattttgtcaatattgtcatattagtctttcagtatacttacttattgttatat 34703803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 11048964 - 11048867
Alignment:
Q  134 tacaagaaaaatgccatatacctaaggtggtttatagtgaccgacaaaaaactgtaggtattgataaattttacttacggaaggagccgtagatatag 231  Q
    |||||||||| ||||||||||||| || ||||||||||||| | | |||| ||||||||||||||||||||||| ||||||||  ||||||| |||||    
T  11048964 tacaagaaaattgccatatacctacggaggtttatagtgacggtcgaaaatctgtaggtattgataaattttacctacggaagtggccgtaggtatag 11048867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 401 - 477
Target Start/End: Original strand, 32996337 - 32996413
Alignment:
Q  401 aaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||  ||||||||||||| ||||| |||||||    
T  32996337 aaaatagtctctaatattaaattaatttgttaatattgtcatattagtccttcaatatacttatttattatcatatt 32996413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 389 - 471
Target Start/End: Complemental strand, 5198101 - 5198019
Alignment:
Q  389 atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgt 471  Q
    ||||| ||| |||||||| ||||||||||||||||| ||  ||||||||||||||||||| |||||||||||||| |||||||    
T  5198101 atttcgttagtcaaaataatctctaacattaaaatacttcattaatattgtcatattagtctttcaatatacttatttattgt 5198019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 389 - 474
Target Start/End: Original strand, 18942826 - 18942911
Alignment:
Q  389 atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    ||||| ||| || |||||||||||||||||||||||  | |||||||||||||||||| |  ||||||||||||||||||||||||    
T  18942826 atttcgttagtccaaatagtctctaacattaaaatacgtcgttaatattgtcatattaatcattcaatatacttacttattgtcat 18942911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 388 - 473
Target Start/End: Complemental strand, 40077684 - 40077599
Alignment:
Q  388 tatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||| |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||  ||||||||| ||| |||| ||||    
T  40077684 tattttattaattaaaatagtctctaacattaaaatattttgttaatattgttatattagtacttcaatatatttatttatcgtca 40077599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 471
Target Start/End: Original strand, 27376273 - 27376392
Alignment:
Q  352 ttaatgtattgaaatttgaaaatagtccttattatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttt 451  Q
    |||||||||| |||||| ||||||||| | ||| || | ||| ||| ||||||| ||| || |  || ||||| || ||||||||| |||||||||||||    
T  27376273 ttaatgtattaaaatttcaaaatagtcttaattgtgcacttctttagtcaaaatggtcactgatgttgaaatatttcgttaatattatcatattagtttt 27376372  T
Q  452 tcaatatacttacttattgt 471  Q
    ||||||||||||||||||||    
T  27376373 tcaatatacttacttattgt 27376392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 465
Target Start/End: Complemental strand, 1247686 - 1247620
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttact 465  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||||| ||| ||||||| ||||    
T  1247686 tcaaaatagtctctaaaattaaaataatctattaatattgtcatattagtcttttaatatacatact 1247620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 477
Target Start/End: Original strand, 12927671 - 12927749
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    |||||||||||  | | ||||||||| ||||||||||||||||| |||||| ||||||| ||||| |||||||||||||    
T  12927671 tcaaaatagtccttcatattaaaatattttgttaatattgtcatgttagttcttcaatagacttagttattgtcatatt 12927749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 476
Target Start/End: Original strand, 5362246 - 5362419
Alignment:
Q  304 atagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatcaa 402  Q
    |||||||||||| | | |||||| |||| ||||||  ||||  | | |||| ||||| ||||||| |||||||| | | ||| |||| ||  ||| ||||    
T  5362246 atagtcattttgatatttgaatgtgtaataagtagccacaacagtctcttagtgtatcgaaatttcaaaatagttcatgattgtgtaatttgttagtcaa 5362345  T
Q  403 aatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||| || | ||||||||| || |||||||| |||||||||||  ||||||||||||| ||||| ||||||    
T  5362346 aatagtccctgatattaaaatacttcgttaatatggtcatattagtccttcaatatacttatttattatcatat 5362419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 38838563 - 38838628
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttac 464  Q
    ||||||||||| |||| |||||||||||||||||||||| |||| ||||| ||| |||||||||||    
T  38838563 tcaaaatagtccctaatattaaaataatttgttaatattatcatgttagtcttttaatatacttac 38838628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 10228752 - 10228875
Alignment:
Q  354 aatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagttttt 452  Q
    ||||||| ||||||| ||||||||| || ||| || | ||| ||| |||||||||||| | || |||||||  |||||||| |||  |||||||||  ||    
T  10228752 aatgtatcgaaatttcaaaatagtctttgattgtgcaattcgttagtcaaaatagtctttgaccttaaaatgttttgttaaaatttacatattagtcctt 10228851  T
Q  453 caatatacttacttattgtcatat 476  Q
    ||||||||||| ||||||||||||    
T  10228852 caatatacttaattattgtcatat 10228875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 474
Target Start/End: Complemental strand, 40355181 - 40355003
Alignment:
Q  297 tgaggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtc-cttattatgtatttcat 395  Q
    ||||||||||||||||||||| | |||||| ||||| |||||||  ||| | |  | ||  ||  ||||||||||||||||| || ||| || | |   |    
T  40355181 tgaggtaatagtcattttggtctttgaatgtgtaacgagtagttgtaatagtcgttcaacataccgaaatttgaaaatagtctctgattgtgcactatgt 40355082  T
Q  396 taatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    || |||||||||||  | ||||||||| | ||  |||||||||||||||||||| ||| |||||| |||||||||||||    
T  40355081 tagtcaaaatagtcatttacattaaaacacttcattaatattgtcatattagttcttctatatacatacttattgtcat 40355003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 46720125 - 46720051
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaat 374  Q
    ||||||||||||| ||||| |||||||  ||||||||||| ||||| | |||| ||||||||||||||| |||||    
T  46720125 ggtaatagtcattatggttcctgaatgaataacaagtagtcacaatagtccctcaatgtattgaaattttaaaat 46720051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 476
Target Start/End: Original strand, 29197030 - 29197074
Alignment:
Q  432 aatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||    
T  29197030 aatattgtcatatcagtctttcaatatacttacttattgtcatat 29197074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 430 - 469
Target Start/End: Original strand, 3116924 - 3116963
Alignment:
Q  430 ttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  3116924 ttaatattgtcatattagtctttcaatatacttacttatt 3116963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 400 - 463
Target Start/End: Complemental strand, 8252374 - 8252311
Alignment:
Q  400 caaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatactta 463  Q
    ||||||||||| | |||||||||||  |||||||||||||| |||||||  |||||||||||||    
T  8252374 caaaatagtctgttacattaaaatacattgttaatattgtcgtattagtcattcaatatactta 8252311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 462
Target Start/End: Original strand, 39129080 - 39129126
Alignment:
Q  416 attaaaataatttgttaatattgtcatattagtttttcaatatactt 462  Q
    ||||||||| |||||||||||||||||||||||  ||||||||||||    
T  39129080 attaaaatattttgttaatattgtcatattagtcattcaatatactt 39129126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 448
Target Start/End: Complemental strand, 19303665 - 19303518
Alignment:
Q  301 gtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaat 399  Q
    ||||||||||||||||| ||||||||  |||  ||| |  ||||| |||| | |||||||  |||||| |||||| || || |||||  | ||| ||| |    
T  19303665 gtaatagtcattttggtctctgaatgtataaggagtggccacaatagccc-tcaatgtatcaaaattttaaaatactcattgattattaacttcgttagt 19303567  T
Q  400 caaaatagtctctaacattaaaataatttgttaatattgtcatattagt 448  Q
    ||||||| ||  |||||||| |||| |||||||||||||||||||||||    
T  19303566 caaaataatcattaacattagaatattttgttaatattgtcatattagt 19303518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 39608415 - 39608483
Alignment:
Q  401 aaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    ||||||||  || ||||||||||| ||  |||||||||||||||||||  |||| ||||||||||||||    
T  39608415 aaaatagttacttacattaaaatacttgattaatattgtcatattagtcattcagtatacttacttatt 39608483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 477
Target Start/End: Complemental strand, 26905196 - 26905149
Alignment:
Q  430 ttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    |||||||| |||||||| |  |||||||||||||||||||||||||||    
T  26905196 ttaatattatcatattattccttcaatatacttacttattgtcatatt 26905149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 477
Target Start/End: Complemental strand, 32188232 - 32188152
Alignment:
Q  397 aatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    |||||||||||||||| || |||||||   |  ||||||||| |||||||||    ||||||||||||||||| |||||||    
T  32188232 aatcaaaatagtctcttacgttaaaatgtctaattaatattgacatattagtcccccaatatacttacttattatcatatt 32188152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 394 - 473
Target Start/End: Original strand, 7165657 - 7165736
Alignment:
Q  394 attaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||| |||||||||||  |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  7165657 attagtcaaaatagtccttaacattaaaataatttgttaatattttcatattagtctttcaatatacttacttattgtca 7165736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 389 - 475
Target Start/End: Original strand, 6788308 - 6788394
Alignment:
Q  389 atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcata 475  Q
    ||||||||| |||||||| ||  | |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| |||||    
T  6788308 atttcattagtcaaaataatcaatgacattaaaataatttgttaatattgtcatactagtcattcaatatacttacttattatcata 6788394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 411 - 473
Target Start/End: Complemental strand, 17742639 - 17742577
Alignment:
Q  411 ctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  17742639 ctaacatttaaataatttgttaatattgtcatattagtcttttaatatacttacttattgtca 17742577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 399 - 476
Target Start/End: Complemental strand, 15301595 - 15301518
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||||| ||||||||||| || |||||||||||| |||||||  ||||||||||||||||||| ||||||    
T  15301595 tcaaaatagtctctgacattaaaatacttcgttaatattgtcttattagtacttcaatatacttacttattatcatat 15301518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 476
Target Start/End: Original strand, 40124262 - 40124439
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtc-cttattatgtatttcattaa 398  Q
    ||||||||||| ||||||   |||||| ||||| |||||| ||||| | || ||||||||| ||||||| ||||| ||| || ||| || | | | |||     
T  40124262 ggtaatagtcactttggtccttgaatgtgtaacgagtagtcacaatagtccattaatgtatcgaaattttaaaatggtctctgattgtgcactccgttag 40124361  T
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||  |||||||||| || ||  ||||||||||||||||||   ||||||||||||||||||||| ||||    
T  40124362 tcaaaatagtccataacattaaagtacttcattaatattgtcatattagcccttcaatatacttacttattgtaatat 40124439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 41746424 - 41746498
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||||||||||||||||||| ||  ||||||||||||||||||   ||||||||||||| |||||||||    
T  41746424 tcaaaatagtctctaacattaaaatacttcattaatattgtcatattagcccttcaatatacttatttattgtca 41746498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 20966184 - 20966132
Alignment:
Q  413 aacattaaaataatttgttaatattgtcatattagtttttcaatatacttact 465  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  20966184 aacattaaaataatttgttaatattgtcatattagtcttttaatatacttact 20966132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 476
Target Start/End: Original strand, 2516769 - 2516831
Alignment:
Q  414 acattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||||  |||||||||||||||||||||||||||||| |||||||| |||| ||||||    
T  2516769 acattaaaatgttttgttaatattgtcatattagtttttcaacatacttacatattatcatat 2516831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 477
Target Start/End: Original strand, 21603509 - 21603587
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    |||||||||||| | | ||||||||| || |||||||||||||| |||||| ||||||| ||||| |||||||||||||    
T  21603509 tcaaaatagtctttgatattaaaatatttcgttaatattgtcatgttagttcttcaatagacttagttattgtcatatt 21603587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 476
Target Start/End: Original strand, 15816891 - 15816950
Alignment:
Q  417 ttaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||| |||||||||||||||||||||||  ||||| ||||||||||||| ||||||    
T  15816891 ttaaaatactttgttaatattgtcatattagtccttcaagatacttacttattttcatat 15816950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 30256305 - 30256232
Alignment:
Q  403 aatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||| ||| || |||||||| |||||||||||||||||||||||   |||||||||||| ||||| ||||||    
T  30256305 aatagtttcttacgttaaaatattttgttaatattgtcatattagtcactcaatatacttatttattatcatat 30256232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 401 - 476
Target Start/End: Original strand, 1901591 - 1901666
Alignment:
Q  401 aaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||  | ||||||||  | ||| ||||||||||||||||| |||||||||||| ||| ||||||||||||    
T  1901591 aaaatagtcaatgacattaaatcactttattaatattgtcatattaatttttcaatatatttatttattgtcatat 1901666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 31967458 - 31967529
Alignment:
Q  391 ttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatactt 462  Q
    ||||||| ||||||||||| |||||||| ||||| ||  || ||||||||||||||||  ||||||||||||    
T  31967458 ttcattagtcaaaatagtccctaacattcaaatacttcattgatattgtcatattagtccttcaatatactt 31967529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 468
Target Start/End: Original strand, 20167467 - 20167536
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttat 468  Q
    |||||| ||||||| ||||||||||| || |||| ||||||| ||||||| |||||||||  ||||||||    
T  20167467 tcaaaacagtctctgacattaaaatatttcgttagtattgtcgtattagtctttcaatatgtttacttat 20167536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 33261009 - 33261086
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||| | ||| ||||||| || ||| |||||||||||||| || ||||||||||||| | || |||||||    
T  33261009 tcaaaatagtctttgacagtaaaatatttcgttgatattgtcatattatttcttcaatatacttattcatagtcatat 33261086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 424
Target Start/End: Original strand, 25765383 - 25765427
Alignment:
Q  380 ttattatgtatttcattaatcaaaatagtctctaacattaaaata 424  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||    
T  25765383 ttattatgtatctctttagtcaaaatagtctctaacattaaaata 25765427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 8940128 - 8940069
Alignment:
Q  416 attaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcata 475  Q
    ||||||||| ||  |||||||||||||||||||  |||||||||| ||||| ||||||||    
T  8940128 attaaaatatttaattaatattgtcatattagtcattcaatatacatacttgttgtcata 8940069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 379
Target Start/End: Complemental strand, 39273459 - 39273380
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcc 379  Q
    |||||||| ||||||||| |||||||| ||||  |||||  ||||| | |||| ||||||||||||||| ||||| ||||    
T  39273459 ggtaatagccattttggtctctgaatgtgtaatgagtagccacaatagtccctaaatgtattgaaatttcaaaatggtcc 39273380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 17237520 - 17237470
Alignment:
Q  394 attaatcaaaatagtctctaacattaaaataatttgttaatattgtcatat 444  Q
    |||| ||||||||||| |||||||||||||| | |||||||||||| ||||    
T  17237520 attagtcaaaatagtcactaacattaaaatattatgttaatattgtgatat 17237470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 12676479 - 12676556
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||| | ||| || |||||||  ||| |||||||||||||||||||   ||||||||||||  |||||||||||    
T  12676479 tcaaaataatttctgacgttaaaatgttttattaatattgtcatattagtccctcaatatacttatctattgtcatat 12676556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 475
Target Start/End: Complemental strand, 19206479 - 19206434
Alignment:
Q  430 ttaatattgtcatattagtttttcaatatacttacttattgtcata 475  Q
    ||||||||||| |||||||  ||||||||| |||||||||||||||    
T  19206479 ttaatattgtcttattagtccttcaatatatttacttattgtcata 19206434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 23359442 - 23359487
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatat 444  Q
    ||||||||||||||||| |||||||  ||||||| |||||||||||    
T  23359442 tcaaaatagtctctaacgttaaaatgttttgttactattgtcatat 23359487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 476
Target Start/End: Complemental strand, 26586553 - 26586476
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||| | | |||||||||| ||| ||||||||||| |||||  ||  |||||||| | ||||||||||||||    
T  26586553 tcaaaatagtttatgacattaaaatgattcgttaatattgtgatattgattgatcaatatattcacttattgtcatat 26586476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 476
Target Start/End: Original strand, 7142327 - 7142387
Alignment:
Q  416 attaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||| |||||||||||||| |||||||| ||| || |||| ||| |||| ||||||    
T  7142327 attaaaatattttgttaatattgttatattagtcttttaagatacctacatattatcatat 7142387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 476
Target Start/End: Original strand, 13242534 - 13242590
Alignment:
Q  420 aaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||| || ||||||||||||||||||||  || |||||  ||||||||||||||||    
T  13242534 aaatacttcgttaatattgtcatattagtcctttaatatggttacttattgtcatat 13242590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 471
Target Start/End: Original strand, 43191839 - 43191911
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgt 471  Q
    |||||| ||| | ||| ||||||||| || ||||||||||| ||||||||  | ||||||| |||||||||||    
T  43191839 tcaaaaaagtttttaatattaaaatatttcgttaatattgttatattagtcctccaatatatttacttattgt 43191911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 302 - 476
Target Start/End: Original strand, 14984407 - 14984581
Alignment:
Q  302 taatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatc 400  Q
    ||||||||||||||||  ||||||| ||||| |||||| ||||| | |||| ||| ||| ||||||| |||||| ||| | ||| || | ||| ||| ||    
T  14984407 taatagtcattttggtc-ctgaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtgcacttcgttagtc 14984505  T
Q  401 aaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||  || ||||||||||| || |||||||||||||||||| |  |||||||||||| |||||||||||||    
T  14984506 aaaatagttcctgacattaaaatatttcgttaatattgtcatattaatccttcaatatacttgcttattgtcatat 14984581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 303 - 468
Target Start/End: Complemental strand, 53706057 - 53705891
Alignment:
Q  303 aatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctta-ttatgtatttcattaatca 401  Q
    ||||||||||||||| | ||| || |||||||||||  | ||| | |||| | ||||| ||||||| |||||||||| || || || | ||  | | |||    
T  53706057 aatagtcattttggtctttgattgtgtaacaagtagccaaaatagtccctcactgtatcgaaatttcaaaatagtccataattgtgcactttgtcagtca 53705958  T
Q  402 aaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttat 468  Q
    ||||| |||||  |||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  53705957 aaataatctctcgcattaaaatactttgttaatattgtcatattagttattcaatatacttacttat 53705891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 399 - 476
Target Start/End: Complemental strand, 34979184 - 34979107
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||||| ||||||||||| || ||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  34979184 tcaaaatagtctctcacattaaaatatttcgttaatattatcatattagtcattcaatatacttacttattgtcatat 34979107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 417 - 477
Target Start/End: Complemental strand, 40954542 - 40954482
Alignment:
Q  417 ttaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40954542 ttaaaataattttttaatattgtcatattagtgtttcaatatacttacttattgtcatatt 40954482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 401 - 476
Target Start/End: Original strand, 46008625 - 46008700
Alignment:
Q  401 aaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||| |||||||||||||||| |||||||||||||||||| | ||| |||||||||| ||||||||||||    
T  46008625 aaaatagtctttaacattaaaataattcgttaatattgtcatattaatcttttaatatacttatttattgtcatat 46008700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 389 - 476
Target Start/End: Complemental strand, 23195740 - 23195653
Alignment:
Q  389 atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||| |  ||||||||| | |||||||| || || |||||||||||||||||||| |||||||||||||| ||||||||||||    
T  23195740 atttcattagttcaaatagtctatgacattaaagtatttcgttaatattgtcatattagtctttcaatatacttaattattgtcatat 23195653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 473
Target Start/End: Original strand, 41897941 - 41898013
Alignment:
Q  401 aaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| ||| |||||| ||| || ||||||    
T  41897941 aaaatagtctctaatattaaaataatttgtaaatattgtcatattagtcttttaatatatttatttgttgtca 41898013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 469
Target Start/End: Complemental strand, 51890130 - 51889961
Alignment:
Q  301 gtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtc-cttattatgtatttcattaat 399  Q
    |||||||||||||||||  || |||| |  |||| ||| |||||| | |||| | ||||||||| ||| ||||||||| || ||||| || ||   || |    
T  51890130 gtaatagtcattttggtcccttaatgtgccacaactagctacaatagtccctcagtgtattgaattttcaaaatagtctctgattatatactttgctagt 51890031  T
Q  400 caaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    ||||||||||||  ||||||||||| |||||||||| |||| |||||||  || ||||||| ||||||||    
T  51890030 caaaatagtctccgacattaaaatactttgttaatagtgtcttattagtcctttaatatacatacttatt 51889961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 436 - 476
Target Start/End: Complemental strand, 26019440 - 26019400
Alignment:
Q  436 ttgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26019440 ttgtcatattagtttttcaatatacttacttattgtcatat 26019400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 430 - 476
Target Start/End: Original strand, 30843668 - 30843714
Alignment:
Q  430 ttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||    
T  30843668 ttaatattgtcatattagtctttcaatatacttatttattgtcatat 30843714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 472
Target Start/End: Complemental strand, 14194979 - 14194858
Alignment:
Q  352 ttaatgtattgaaatttgaaaatagtcc-ttattatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagttt 450  Q
    |||||||||  |||||| |||||||||| |||||||| | ||| | | |||| ||||||||| | ||||||||| ||  ||||||||||||||| |||      
T  14194979 ttaatgtatcaaaatttcaaaatagtccattattatgcacttcttaagtcaatatagtctctgatattaaaatacttcattaatattgtcatatcagtca 14194880  T
Q  451 ttcaatatacttacttattgtc 472  Q
    || |||||||||| ||||||||    
T  14194879 tttaatatacttagttattgtc 14194858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 39722338 - 39722427
Alignment:
Q  148 catatacctaaggtggtttatagtgaccgacaaaaaactgtaggtattgataaattttacttacggaaggagccgtagatatagatatct 237  Q
    |||||||||| || ||||||||||||| ||| |||| |||||||||||||||  |||||| ||||||||  || |||| ||||| |||||    
T  39722338 catatacctacggaggtttatagtgacggacgaaaatctgtaggtattgatatgttttacctacggaagtggctgtaggtataggtatct 39722427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 477
Target Start/End: Original strand, 22153669 - 22153761
Alignment:
Q  386 tgtatttcattaatcaaaatagtctctaacattaaaat-aatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    |||||||| ||| |||||| | ||||||||||||||||   ||| |||||||| |||||||||| ||| |||||||||| ||||||| |||||    
T  22153669 tgtatttcgttactcaaaacaatctctaacattaaaatgttttttttaatattatcatattagtgttttaatatacttatttattgttatatt 22153761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 32345738 - 32345655
Alignment:
Q  352 ttaatgtattgaaatttgaaaatagtccttattatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatat 436  Q
    ||||| ||| ||||||| ||||||||| ||||  |||||||||||| |||||||||||||| | ||| ||||||||| |||||||    
T  32345738 ttaatatatagaaattttaaaatagtcattatg-tgtatttcattagtcaaaatagtctctgatattgaaataatttcttaatat 32345655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 54630824 - 54630912
Alignment:
Q  389 atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    ||||||||||||||||||||||||  |||||||| | ||  ||||||   |||||| | || |||||||||||||||||||| ||||||    
T  54630824 atttcattaatcaaaatagtctctcgcattaaaaaatttctttaatacgatcatatcaattcttcaatatacttacttattgacatatt 54630912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 444
Target Start/End: Complemental strand, 2096364 - 2096273
Alignment:
Q  354 aatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatat 444  Q
    ||||||||||||||  |||||||||  | ||| |||||||||||||||||||||||||||    || ||||| |||||||||||| ||||||    
T  2096364 aatgtattgaaattctaaaatagtcaatgattgtgtatttcattaatcaaaatagtctctcgtgttgaaatattttgttaatattatcatat 2096273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 476
Target Start/End: Original strand, 5800211 - 5800330
Alignment:
Q  358 tattgaaatttgaaaatagtcctta-ttatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaat 456  Q
    |||||| |||| ||||||||||||| |||||   |  |||| |||||||||||||| ||||||||||  ||  ||||||||||||||||||| | ||  |    
T  5800211 tattgatattttaaaatagtccttaattatgcgctatattagtcaaaatagtctcttacattaaaatgtttgtttaatattgtcatattagtctctccgt 5800310  T
Q  457 atacttacttattgtcatat 476  Q
     |||||| ||||||||||||    
T  5800311 gtacttatttattgtcatat 5800330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 468
Target Start/End: Original strand, 50271494 - 50271560
Alignment:
Q  402 aaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttat 468  Q
    ||||| ||||| || |||||||| || |||||||||||| ||| |||| ||||||||||||||||||    
T  50271494 aaataatctctgacgttaaaatatttggttaatattgtcttatcagttcttcaatatacttacttat 50271560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 3941643 - 3941720
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||| |||||||  |||||| ||| ||  |||||||||||||||||||  |||||||||| |||||||| ||||||    
T  3941643 tcaaaacagtctctgccattaagatacttcattaatattgtcatattagtccttcaatatacctacttattatcatat 3941720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 474
Target Start/End: Complemental strand, 12832283 - 12832206
Alignment:
Q  397 aatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    |||||||||||||||| | ||||||||  ||  ||||||||||||||| |||  ||||||||||| ||||||| ||||    
T  12832283 aatcaaaatagtctcttatattaaaatgcttcattaatattgtcatataagtccttcaatatactaacttattttcat 12832206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 476
Target Start/End: Original strand, 20948290 - 20948336
Alignment:
Q  430 ttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||||    
T  20948290 ttaatattatcatatcagttcttcaatatacttatttattgtcatat 20948336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 27071280 - 27071354
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||||||| |||||||||| ||| || ||||||||||||| |||    ||||||| ||||||| |||||    
T  27071280 tcaaaatagtctcttacattaaaatgattcgtcaatattgtcatatcagtcccacaatatatttacttaatgtca 27071354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 476
Target Start/End: Complemental strand, 1183225 - 1183148
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||||||| | | ||||||||| ||   |||||||||||||| |||  |||||||||  |||||||||||||||    
T  1183225 tcaaaatagtctttgatattaaaatatttcactaatattgtcatatcagtcattcaatatatgtacttattgtcatat 1183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 476
Target Start/End: Original strand, 24255328 - 24255377
Alignment:
Q  427 ttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||||| |||||||||||  ||||||| |||| ||||||||||||    
T  24255328 ttgttaatattatcatattagttcatcaatatgcttatttattgtcatat 24255377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 31186668 - 31186616
Alignment:
Q  396 taatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagt 448  Q
    ||||||||||||| | | |||||||||||   |||||||||||||||||||||    
T  31186668 taatcaaaatagtgtttgacattaaaatatcatgttaatattgtcatattagt 31186616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 476
Target Start/End: Original strand, 36080625 - 36080697
Alignment:
Q  404 atagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||||| ||||||||  ||  ||||||||||| ||||| || |||| |||| |||||| |||||||||    
T  36080625 atagtctctaatattaaaatgtttcattaatattgtcgtattaattcttcagtatatttacttgttgtcatat 36080697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 473
Target Start/End: Complemental strand, 50239913 - 50239873
Alignment:
Q  433 atattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  50239913 atattgtcatattagtccttcaatatacttatttattgtca 50239873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 237
Target Start/End: Original strand, 112079 - 112185
Alignment:
Q  131 cactacaagaaaaatgccatatacctaaggtggtttatagtgaccgacaaaaaactgtaggtattgataaattttacttacggaaggagccgtagatata 230  Q
    ||||||||||||| ||||||||||||| || ||||||||||||| ||| |||| |||||||||||||||  |||||| ||||||||  ||||||| ||||    
T  112079 cactacaagaaaattgccatatacctacggaggtttatagtgacggacgaaaatctgtaggtattgatatgttttacctacggaagtggccgtaggtata 112178  T
Q  231 gatatct 237  Q
    | |||||    
T  112179 ggtatct 112185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 391 - 473
Target Start/End: Complemental strand, 49880245 - 49880163
Alignment:
Q  391 ttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||||| ||||||||||| |||||||||||||| ||  || |||||||||||||||| ||||||||||||||||||||||||    
T  49880245 ttcattagtcaaaatagtccctaacattaaaatacttcattgatattgtcatattagtctttcaatatacttacttattgtca 49880163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 394 - 477
Target Start/End: Original strand, 7151907 - 7151989
Alignment:
Q  394 attaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    ||||||||||||||| ||| ||||||||||| || |||||||||||||||||||| ||| |||||||||||||||| |||||||    
T  7151907 attaatcaaaatagtttcttacattaaaata-ttcgttaatattgtcatattagtcttttaatatacttacttattatcatatt 7151989  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 400 - 474
Target Start/End: Complemental strand, 27463914 - 27463840
Alignment:
Q  400 caaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    |||||||||  ||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  27463914 caaaatagttcctaacgttaaaatactttgttaatattgttatattagtctttcaatatacttacttattgtcat 27463840  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 476
Target Start/End: Original strand, 6541117 - 6541179
Alignment:
Q  414 acattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||||| || ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  6541117 acattaaaatatttcgttaatattgtcatattagtccttcaatatacttacttattgtcatat 6541179  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 476
Target Start/End: Complemental strand, 34177593 - 34177415
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaa 398  Q
    ||||||||||||||||||  ||||||| ||||  ||||| |||||| | || | ||||  ||||||||| |||||||||| | ||| || |||   |||     
T  34177593 ggtaatagtcattttggtccctgaatgtgtaatgagtagctacaatagtccttcaatgatttgaaatttcaaaatagtccatgattgtgcattatgttag 34177494  T
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagt-ttttcaatatacttacttattgtcatat 476  Q
    |||||||||||||| ||||||||||  || ||||||||| ||| |||||| | || |||||| ||||||||||||||||    
T  34177493 tcaaaatagtctcttacattaaaatgtttggttaatattttcacattagtatgtttaatataattacttattgtcatat 34177415  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 398 - 473
Target Start/End: Original strand, 31738286 - 31738361
Alignment:
Q  398 atcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||||| |||||||||||| ||| ||||||||||||||||||| |  || |||||||||| |||||||||    
T  31738286 atcaaaatagtccctaacattaaaagaatatgttaatattgtcatattaatcatttaatatacttatttattgtca 31738361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 417 - 476
Target Start/End: Complemental strand, 36145040 - 36144981
Alignment:
Q  417 ttaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  36145040 ttaaaatcttttattaatattgtcatattagtttttcaatatacttagttattgtcatat 36144981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 390 - 469
Target Start/End: Complemental strand, 52362099 - 52362020
Alignment:
Q  390 tttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    |||||||  |||||||| ||| ||||||||||||| |||||||||||| ||||||||||| ||| ||||||||| |||||    
T  52362099 tttcattggtcaaaataatctttaacattaaaatactttgttaatattatcatattagttcttcgatatacttatttatt 52362020  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 476
Target Start/End: Complemental strand, 5043501 - 5043426
Alignment:
Q  401 aaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||| | | ||||||||||| |||||||||||||| ||||| ||  ||||||||||||| ||||||||||||    
T  5043501 aaaatagtgtttgacattaaaatattttgttaatattgttatattggtcattcaatatacttatttattgtcatat 5043426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 399 - 469
Target Start/End: Complemental strand, 5529878 - 5529808
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    |||||||||| ||| ||||||||||| || |||||||||||| |||||||  || ||||||||||||||||    
T  5529878 tcaaaatagtttctgacattaaaatacttcgttaatattgtcttattagtacttaaatatacttacttatt 5529808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 8984021 - 8984095
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||||||| ||||||||||  |||||||||||| ||| |||||| | | |||||||||| |||||||||    
T  8984021 tcaaaatagtctcttacattaaaatgttttgttaatattctcacattagtctcttaatatacttatttattgtca 8984095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 474
Target Start/End: Complemental strand, 8069154 - 8069069
Alignment:
Q  389 atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcat 474  Q
    ||||| ||| |||||||| ||  ||| ||||||||| ||||||||||||||||||||| |   |||||||||||||||||| ||||    
T  8069154 atttcgttagtcaaaataatccttaatattaaaatattttgttaatattgtcatattaatccatcaatatacttacttattatcat 8069069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 465
Target Start/End: Complemental strand, 30050653 - 30050536
Alignment:
Q  349 cccttaatgtattgaaatttgaaaatagtcctt-attatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattag 447  Q
    |||||||||||| ||||||| |||||||||  | |||||| | ||  ||| |||||||||||||| |||||||||||  | |||||||||| |||||||     
T  30050653 cccttaatgtatcgaaatttcaaaatagtctatgattatgcaatttgttagtcaaaatagtctctcacattaaaatatctcgttaatattgacatattaa 30050554  T
Q  448 tttttcaatatacttact 465  Q
       |||||||||||||||    
T  30050553 cccttcaatatacttact 30050536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 476
Target Start/End: Complemental strand, 35621572 - 35621487
Alignment:
Q  391 ttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||| |||||| ||||||| ||| ||||||  |||||||||  ||||||||||||  || |||||||||||||||| ||||||    
T  35621572 ttcattattcaaaaaagtctctcacactaaaatgctttgttaattctgtcatattagtcctttaatatacttacttattttcatat 35621487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 414 - 469
Target Start/End: Complemental strand, 21379481 - 21379426
Alignment:
Q  414 acattaaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    |||||||||||||||||||||||| ||||| ||||  || ||||||||||||||||    
T  21379481 acattaaaataatttgttaatattatcatactagtccttgaatatacttacttatt 21379426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 476
Target Start/End: Complemental strand, 32743348 - 32743261
Alignment:
Q  389 atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||| ||| |||||||| ||||| ||||||||||| || | ||||||| | |||||| |  ||||||||||||||||| ||||||||    
T  32743348 atttcgttagtcaaaataatctctgacattaaaatatttcgctaatattcttatattaatcattcaatatacttacttactgtcatat 32743261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 429 - 476
Target Start/End: Complemental strand, 34827040 - 34826993
Alignment:
Q  429 gttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  34827040 gttaatattgtcatattagtcattcaatatacttatttattgtcatat 34826993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 463
Target Start/End: Original strand, 9890608 - 9890682
Alignment:
Q  389 atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatactta 463  Q
    ||||| ||| |||||||| ||  |||||||| |||| || ||||||||||||||||||||  |||||||||||||    
T  9890608 atttcgttagtcaaaataatccttaacattagaatacttcgttaatattgtcatattagtccttcaatatactta 9890682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 473
Target Start/End: Original strand, 45919840 - 45919922
Alignment:
Q  391 ttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||||| |||||||| || |||||||||||||| ||  || |||||||||||||     |||||||||||||||||||||||    
T  45919840 ttcattagtcaaaataatccctaacattaaaatacttcattgatattgtcatattgacccttcaatatacttacttattgtca 45919922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 477
Target Start/End: Complemental strand, 39330177 - 39330129
Alignment:
Q  430 ttaatattgtcatattagtttttcaatata-cttacttattgtcatatt 477  Q
    |||||||||||||||||||| |||||||||  |||||||||||||||||    
T  39330177 ttaatattgtcatattagttcttcaatatattttacttattgtcatatt 39330129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 476
Target Start/End: Complemental strand, 52065673 - 52065614
Alignment:
Q  417 ttaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    |||||||| ||| |||||||||| |||||||||||| ||||| |||| ||||||| ||||    
T  52065673 ttaaaatattttattaatattgtgatattagttttttaatatgcttaattattgttatat 52065614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 449
Target Start/End: Original strand, 3728129 - 3728179
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtt 449  Q
    |||||||||||||| || |||||||| ||| |||||||||| |||||||||    
T  3728129 tcaaaatagtctcttacgttaaaatattttattaatattgttatattagtt 3728179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 465
Target Start/End: Complemental strand, 38901746 - 38901645
Alignment:
Q  363 aaatttgaaaatagtccttattatgtatttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatactt 462  Q
    |||||| ||||||||| ||||| |  ||||| |||||||||||||||| |  |||| ||||  ||  ||||||||||||||||| | | |||||||||||    
T  38901746 aaatttcaaaatagtc-ttattgtacatttcgttaatcaaaatagtctttggcattgaaatgtttcattaatattgtcatattaatctctcaatatactt 38901648  T
Q  463 act 465  Q
    |||    
T  38901647 act 38901645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 13360398 - 13360353
Alignment:
Q  300 ggtaatagtcattttggtttctgaatgcgtaacaagtagttacaat 345  Q
    ||||||||||||||||||||||||||  || ||||||||| |||||    
T  13360398 ggtaatagtcattttggtttctgaatttgttacaagtagtcacaat 13360353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 50155886 - 50155845
Alignment:
Q  297 tgaggtaatagtcattttggtttctgaatgcgtaacaagtag 338  Q
    |||| ||||| ||||||||||||||||||||||||| |||||    
T  50155886 tgagttaataatcattttggtttctgaatgcgtaacgagtag 50155845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 475
Target Start/End: Complemental strand, 51273418 - 51273373
Alignment:
Q  430 ttaatattgtcatattagtttttcaatatacttacttattgtcata 475  Q
    |||||||||||||||||||   |||||||| |||||||||||||||    
T  51273418 ttaatattgtcatattagtcactcaatatatttacttattgtcata 51273373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 469
Target Start/End: Complemental strand, 26421545 - 26421469
Alignment:
Q  393 cattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    |||||||||||||| ||||||  |||||||||  | ||||||||||| |||||| || ||| ||||| ||| |||||    
T  26421545 cattaatcaaaataatctctagtattaaaatatctcgttaatattgttatattatttcttcgatatatttatttatt 26421469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 473
Target Start/End: Complemental strand, 47921974 - 47921890
Alignment:
Q  389 atttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||||||| |||||||| || |||||||||  ||| ||  ||||| || ||||||||    |||||||||||||||||||||||    
T  47921974 atttcattagtcaaaataatccctaacattatgatacttcattaatcttatcatattaacccttcaatatacttacttattgtca 47921890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 17187 - 17261
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    |||||||||||  ||||||||||||| || ||||||||||||||| |||| |||||||||||||| |||||||||    
T  17187 tcaaaatagtccataacattaaaatacttcgttaatattgtcatactagtatttcaatatacttatttattgtca 17261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 473
Target Start/End: Original strand, 20074 - 20156
Alignment:
Q  391 ttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||||| |||||||||||||||||||| ||||| ||  || ||||||||||||||||  ||||||||||||| |||||||||    
T  20074 ttcattagtcaaaatagtctctaacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttattgtca 20156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 473
Target Start/End: Original strand, 2457 - 2539
Alignment:
Q  391 ttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtca 473  Q
    ||||||| ||||||||||| |||||||| ||||| ||  || ||||||||||||||||  ||||||||||||| |||||||||    
T  2457 ttcattagtcaaaatagtccctaacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttattgtca 2539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 477
Target Start/End: Complemental strand, 349204 - 349126
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    |||||||||||| | | ||||||||| || |||||||||||||| |||||| ||||||| ||||| |||||||||||||    
T  349204 tcaaaatagtctttgatattaaaatatttcgttaatattgtcatgttagttcttcaatagacttagttattgtcatatt 349126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 328863 - 328940
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatat 476  Q
    ||||||| |||||  ||||||||||  |||||| ||||||||||||||||| ||||||| ||||||||||| ||||||    
T  328863 tcaaaatcgtctccgacattaaaatgttttgttgatattgtcatattagttcttcaatacacttacttattatcatat 328940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 469
Target Start/End: Complemental strand, 35107 - 35029
Alignment:
Q  391 ttcattaatcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttatt 469  Q
    ||||||| ||||||||||| |||||||| ||||| ||  || ||||||||||||||||  ||||||||||||| |||||    
T  35107 ttcattagtcaaaatagtccctaacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatt 35029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 1675 - 1751
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcata 475  Q
    |||||||||||||||| ||| ||||   |  ||||||||||||||||| | |||||||||| |||||||||||||||    
T  1675 tcaaaatagtctctaatattgaaatgtctcattaatattgtcatattaatctttcaatatatttacttattgtcata 1751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 477
Target Start/End: Original strand, 20536 - 20710
Alignment:
Q  303 aatagtcattttggtttctgaatgcgtaacaagtagttacaatggccccttaatgtattgaaatttgaaaatagt-ccttattatgtatttcattaatca 401  Q
    |||||||| |||| |  ||||||| || || |||||||| ||| | |||| ||||| | ||||||  |||||||| ||| ||| |||| || |||| |||    
T  20536 aatagtcactttgatccctgaatgagtgacgagtagttataatagtccctcaatgtgtcgaaattgcaaaatagttcctgattgtgtagtttattagtca 20635  T
Q  402 aaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    ||||||||  |   ||||||||| ||  |||||||||||||||||||  ||||||| ||||| |||||||||||||    
T  20636 aaatagtcattgttattaaaatatttcattaatattgtcatattagtccttcaatagactta-ttattgtcatatt 20710  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 477
Target Start/End: Complemental strand, 29454 - 29376
Alignment:
Q  399 tcaaaatagtctctaacattaaaataatttgttaatattgtcatattagtttttcaatatacttacttattgtcatatt 477  Q
    |||||||||||| | | ||||| ||| || |||||||||||||| |||||| ||||||| ||||| ||||| |||||||    
T  29454 tcaaaatagtctttgatattaatatatttcgttaatattgtcatgttagttcttcaatagacttagttattttcatatt 29376  T

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