View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6790_low_9 (Length: 469)
Name: NF6790_low_9
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6790_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Complemental strand, 41761518 - 41761072
Alignment:
| Q |
11 |
acatcaaaacagatcaaaatggtaaaaatgaaggaggttaatgggagtagatgttacatgaaactatgaattaaaagggacggggaaagctttgatacca |
110 |
Q |
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| T |
41761518 |
acatcaaaacagatcaaaatggtaaaaatgaaggaggttaatgggagtagatgttacatgaaactatgaattaaaagggacggggaaagctttgatacca |
41761419 |
T |
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| Q |
111 |
atacataattaagccttcttgctactcggattagtttcctgctgttcctgcccagctagggaaaatttcttcactttctgttgatgcagaaaacaaaacc |
210 |
Q |
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| T |
41761418 |
atacataattaagccttcttgctactcggattagtttcctgctgttcctgcccagctagggaaaatttcttcactttctgttgatgcagaaaacaaaacg |
41761319 |
T |
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| Q |
211 |
aactcaaataaaacagaagaaagcacaaaaatacacaactctgttcaaatatctgtaattctgcatgcataaactcaaatatatcaatccattgagttgg |
310 |
Q |
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| T |
41761318 |
aactcaaataaaacagaagaaagcacaaaaatacacaactctgttcaaatatctgtaattctgcatgcataaactcaaatatatcaatccattgagttgg |
41761219 |
T |
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| Q |
311 |
aagtgaaagaaaaagccattaacagtaaactcgtaagtgcataattgtatggcatccattgagaaaaacgacaacaaatatgaattagattaaagtgttt |
410 |
Q |
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| T |
41761218 |
aagtgaaaggaaaagccattaacagtaaactcgtaagtgcataattgtatggcatccattgagaagaaggacaacaaatatgaattagattaaagtgttt |
41761119 |
T |
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| Q |
411 |
tcatattatgtttgatataccatatcaaatgcaaatcacatgatgtc |
457 |
Q |
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| T |
41761118 |
tcatattatgtttgatataccatatcaaatgcaaatcacatgatgtc |
41761072 |
T |
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