View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6791_high_5 (Length: 283)
Name: NF6791_high_5
Description: NF6791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6791_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 21705597 - 21705857
Alignment:
| Q |
9 |
acatcacatttccacgggaatgtaacttgcagaatctcaagatcctcagcttagtctcatgcaagtctggtgaagtactcttcccgacatctgttgctca |
108 |
Q |
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| T |
21705597 |
acatcacatttccacgggaatgtaacttgcagaatctcaagatcctcatcttattctcatgcaagtctggtgaagtactcttcccgacatctgttgctca |
21705696 |
T |
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| Q |
109 |
aagtctgcaaaaattagaagatctggaaataggtggatgtcatgaattgaagcttataattgcggccagtggaagagagcatgatggttgtaacacaaga |
208 |
Q |
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| T |
21705697 |
aagtctgcaaaaattagaagagctgcgcatacgtgaatgtcgtgaattgaagcttataattgcggccagtggaagagagcatgatggttgtaacacaaga |
21705796 |
T |
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| Q |
209 |
gaggatatagttccagatcaaatgaattctcattttctcatgcctagtctaaggacagtta |
269 |
Q |
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| T |
21705797 |
gaggatatagttccagatcaaatgaattctcattttctcatgcctagtctaaggagagtta |
21705857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 21713909 - 21713718
Alignment:
| Q |
10 |
catcacatttccacgggaatgtaacttgcagaatctcaagatcctcagcttagtctcatgcaagtctggtgaagtactcttcccgacatctgttgctcaa |
109 |
Q |
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| T |
21713909 |
catcacatttccacgggaatgtaacttgcagaatctcaagatcctcagtttagagtattgcaagtctggtgaagtactctttccgaaatctgttgctcaa |
21713810 |
T |
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| Q |
110 |
agtctgcaaaaattagaagatctggaaataggtggatgtcatgaattgaagcttataattgcggccagtggaagagagcatgatggttgtaa |
201 |
Q |
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| T |
21713809 |
agtctgcaacaattagaacaactgaaaatacgtaattgccatgaattgaagcttataattgctgcaggtggaagagagcatggttgttgtaa |
21713718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 244
Target Start/End: Original strand, 21117084 - 21117249
Alignment:
| Q |
79 |
tgaagtactcttcccgacatctgttgctcaaagtctgcaaaaattagaagatctggaaataggtggatgtcatgaattgaagcttataattgcggccagt |
178 |
Q |
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||||||||||||| | ||||||||||||||||| |||| || ||||| | || |||| |||| || || ||||||||| ||||||||| || ||| |
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| T |
21117084 |
tgaagtactcttctcagcatctgttgctcaaagtttgcagcaactagaacaactaaaaatcagtgggtgctataaattgaagcatataattgctgctagt |
21117183 |
T |
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| Q |
179 |
ggaagagagcatgatggttgtaacacaagagaggatatagttccagatcaaatgaattctcatttt |
244 |
Q |
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| T |
21117184 |
ggaaggcaacatggtggtagtaatacaagtgaggaaataagtccagctccaatgaattctcatttt |
21117249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 21124582 - 21124676
Alignment:
| Q |
150 |
atgaattgaagcttataattgcggccagtggaagagagcatgatggttgtaacacaagagaggatatagttccagatcaaatgaattctcatttt |
244 |
Q |
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| T |
21124582 |
atgaattgaagcatataattgctgctagtggaagccaacatggtggtagtaatacaagtgaggaaataagtccagctccaatgaattctcatttt |
21124676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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