View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6791_low_1 (Length: 501)
Name: NF6791_low_1
Description: NF6791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6791_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 31097888 - 31097391
Alignment:
| Q |
1 |
cattatttggatcgcagagaaaaaagtaggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattgagaatgcga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31097888 |
cattatttggatcgcagagaaaaaagtaggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattgagaatgcga |
31097789 |
T |
|
| Q |
101 |
gacggattggttggggtagaggtagtggtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctttacaaagtaaatc |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31097788 |
gacggattggtcggggtagaggtagtggtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctttacaaagtaaatc |
31097689 |
T |
|
| Q |
201 |
cacatcatggagacagcaaggcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtctaatagtaatgatatttttatcaagtcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31097688 |
cacatcatggagacagcaaggcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtttaatagtaatgatatttttatcaagtcag |
31097589 |
T |
|
| Q |
301 |
tttttatatcaagatttaattaacaatcagtttgatatttttaaattgataaagnnnnnnnnacttattctcaatctttatccctttagagttctatata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31097588 |
tttttatatcaagatttaattaacaatcagtttgatatttttaaattgataaagttttttttacttattctcaatctttatccctttagagttctatata |
31097489 |
T |
|
| Q |
401 |
ctgatcaaaggtagcaagaattcaaccgatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaactaatgatgtccatctcatt |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
31097488 |
ctgatcaaaggtagcaagaattcaaccgatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaactaatgaggtccacctcatt |
31097391 |
T |
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