View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6791_low_11 (Length: 272)

Name: NF6791_low_11
Description: NF6791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6791_low_11
NF6791_low_11
[»] chr4 (12 HSPs)
chr4 (1-261)||(8654727-8654987)
chr4 (5-261)||(47541151-47541406)
chr4 (5-261)||(3129640-3129893)
chr4 (74-261)||(7662966-7663153)
chr4 (56-261)||(2631624-2631829)
chr4 (55-261)||(20675248-20675454)
chr4 (111-261)||(23873240-23873390)
chr4 (111-261)||(55298846-55298996)
chr4 (65-261)||(8486699-8486895)
chr4 (193-261)||(49926112-49926180)
chr4 (193-261)||(19647935-19648003)
chr4 (193-261)||(29553586-29553654)
[»] scaffold0029 (1 HSPs)
scaffold0029 (5-261)||(134512-134768)
[»] scaffold0002 (2 HSPs)
scaffold0002 (5-261)||(312339-312595)
scaffold0002 (5-261)||(327793-328049)
[»] chr5 (5 HSPs)
chr5 (5-261)||(10486578-10486834)
chr5 (26-261)||(34481173-34481408)
chr5 (144-261)||(587742-587859)
chr5 (25-261)||(35122384-35122620)
chr5 (214-250)||(27795720-27795756)
[»] chr3 (12 HSPs)
chr3 (5-261)||(49731590-49731846)
chr3 (5-261)||(30167002-30167258)
chr3 (55-261)||(2813208-2813414)
chr3 (55-261)||(29309634-29309840)
chr3 (55-261)||(6176186-6176392)
chr3 (137-261)||(9379323-9379447)
chr3 (186-261)||(23601999-23602074)
chr3 (194-261)||(25872955-25873022)
chr3 (186-243)||(8943596-8943653)
chr3 (187-261)||(14867625-14867699)
chr3 (215-253)||(46248738-46248776)
chr3 (214-252)||(48569906-48569944)
[»] chr1 (9 HSPs)
chr1 (2-261)||(21528387-21528650)
chr1 (20-259)||(36306012-36306251)
chr1 (38-261)||(37530792-37531015)
chr1 (111-261)||(32353061-32353211)
chr1 (55-261)||(48073139-48073345)
chr1 (177-261)||(48265548-48265632)
chr1 (186-261)||(30970447-30970522)
chr1 (187-261)||(16873332-16873406)
chr1 (193-261)||(25504839-25504907)
[»] chr7 (11 HSPs)
chr7 (20-261)||(15653378-15653619)
chr7 (20-214)||(46623966-46624160)
chr7 (55-261)||(13440279-13440485)
chr7 (55-261)||(12378436-12378639)
chr7 (186-261)||(45943077-45943152)
chr7 (129-252)||(43105546-43105669)
chr7 (187-262)||(41339750-41339825)
chr7 (187-261)||(19728713-19728787)
chr7 (215-253)||(27723973-27724011)
chr7 (228-261)||(46623931-46623964)
chr7 (193-261)||(45992802-45992870)
[»] chr8 (5 HSPs)
chr8 (20-261)||(7452578-7452819)
chr8 (56-261)||(16420719-16420924)
chr8 (209-261)||(19384572-19384624)
chr8 (187-252)||(12134563-12134628)
chr8 (214-250)||(13879354-13879390)
[»] chr2 (13 HSPs)
chr2 (5-261)||(45421745-45422002)
chr2 (56-261)||(13550350-13550555)
chr2 (55-257)||(26894320-26894522)
chr2 (55-257)||(26899759-26899961)
chr2 (111-261)||(43627725-43627875)
chr2 (162-261)||(31085452-31085551)
chr2 (162-261)||(33548098-33548197)
chr2 (56-182)||(13550882-13551008)
chr2 (203-261)||(22052853-22052911)
chr2 (203-262)||(36804137-36804196)
chr2 (214-262)||(36804352-36804400)
chr2 (56-97)||(26679225-26679266)
chr2 (214-250)||(40176905-40176941)
[»] scaffold0131 (1 HSPs)
scaffold0131 (5-135)||(4207-4337)
[»] scaffold0418 (1 HSPs)
scaffold0418 (74-261)||(7901-8088)
[»] chr6 (9 HSPs)
chr6 (26-261)||(25318080-25318315)
chr6 (26-261)||(26205574-26205809)
chr6 (55-261)||(23347175-23347381)
chr6 (111-261)||(15674051-15674205)
chr6 (206-261)||(33630323-33630378)
chr6 (228-261)||(1683266-1683299)
chr6 (187-250)||(4474935-4474998)
chr6 (193-261)||(19255866-19255934)
chr6 (193-261)||(33640144-33640212)
[»] scaffold0112 (1 HSPs)
scaffold0112 (187-261)||(15490-15564)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 8654727 - 8654987
Alignment:
Q  1 tggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654727 tggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgt 8654826  T
Q  101 ttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654827 ttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagac 8654926  T
Q  201 gtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654927 gtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 8654987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 47541406 - 47541151
Alignment:
Q  5 tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 104  Q
    ||||||| ||||| ||||||||| ||| |||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||| |||||      
T  47541406 tggtttgttgatcatgtggctagaagg-ttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgttttt 47541308  T
Q  105 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtag 204  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||  ||| ||| ||||||||||||||||| |    
T  47541307 gtagactgtttgagttaacagagaataagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcg 47541208  T
Q  205 gttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
     |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||    
T  47541207 tttgtggcagtggaaggaggagatgttagcggagtgtagggctttacttcttgatgt 47541151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 3129640 - 3129893
Alignment:
Q  5 tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 104  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||      
T  3129640 tggtttgttgatcatgtggctaggagggttggagatggagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgtttta 3129739  T
Q  105 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtag 204  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||   ||||||  |||||||||||||||| |    
T  3129740 gtagactgtttgagttaacagagaataagttcatgtctgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttg 3129839  T
Q  205 gttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
     ||||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  3129840 tttgtggcagtgggaggag---atgttagcggagtgtagggctttacttcttgatgt 3129893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 74 - 261
Target Start/End: Original strand, 7662966 - 7663153
Alignment:
Q  74 ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 173  Q
    |||||||||||||| || ||||||||||| |||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  174 agtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||  |||| |||| ||||||||||| ||||| ||||||||||||||||||||  |||||| |||||||| ||||||||||||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttgatgt 7663153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 56 - 261
Target Start/End: Complemental strand, 2631829 - 2631624
Alignment:
Q  56 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt 155  Q
    |||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||||| ||||||     
T  2631829 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc 2631730  T
Q  156 tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttct 255  Q
    | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| |||  ||||||||||||||||||||    
T  2631729 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttct 2631630  T
Q  256 tgatgt 261  Q
    ||||||    
T  2631629 tgatgt 2631624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 55 - 261
Target Start/End: Complemental strand, 20675454 - 20675248
Alignment:
Q  55 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 154  Q
    ||||||||  ||||||||||||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| ||| || ||||| ||||||    
T  20675454 gttttggtctgataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttg 20675355  T
Q  155 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 254  Q
     | | |||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| | |  ||||||||| |||||||||    
T  20675354 ctctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttc 20675255  T
Q  255 ttgatgt 261  Q
    |||||||    
T  20675254 ttgatgt 20675248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 111 - 261
Target Start/End: Original strand, 23873240 - 23873390
Alignment:
Q  111 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 210  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||  ||    
T  23873240 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg 23873339  T
Q  211 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  23873340 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 23873390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 111 - 261
Target Start/End: Complemental strand, 55298996 - 55298846
Alignment:
Q  111 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 210  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   ||||||||||||||||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  211 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 55298846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 65 - 261
Target Start/End: Original strand, 8486699 - 8486895
Alignment:
Q  65 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 164  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || |  |||||| | |||||||    
T  8486699 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttg 8486798  T
Q  165 attcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||||| | ||||||||   |||||||||||||||||||||| |||||||||||| |||| ||| |||   |||||||||||||||||||||||||    
T  8486799 attcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttgatgt 8486895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 49926112 - 49926180
Alignment:
Q  193 gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||| || || ||||||  |||||||||||| ||||||| ||||||||||||||| || ||||||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttgatgt 49926180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 19648003 - 19647935
Alignment:
Q  193 gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  19648003 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 19647935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 29553586 - 29553654
Alignment:
Q  193 gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||| || || ||||||  |||||||||||| ||||||| |||||||||| |||||||  |||||||    
T  29553586 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagtgtaggactttactgtttgatgt 29553654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 134512 - 134768
Alignment:
Q  5 tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134512 tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 134611  T
Q  105 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  134612 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtag 134711  T
Q  205 gttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134712 gttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 134768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 312339 - 312595
Alignment:
Q  5 tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312339 tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 312438  T
Q  105 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  312439 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtag 312538  T
Q  205 gttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312539 gttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 312595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 327793 - 328049
Alignment:
Q  5 tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327793 tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 327892  T
Q  105 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  327893 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtag 327992  T
Q  205 gttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327993 gttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 328049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 10486578 - 10486834
Alignment:
Q  5 tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 104  Q
    ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  10486578 tggtttgttgatcatgtggctaggagggttggagatggagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttc 10486677  T
Q  105 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtag 204  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||    
T  10486678 gtaggctgtttgagttaacatagaataagttcatgtctgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtag 10486777  T
Q  205 gttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10486778 gttgtggcagtgggaggaggacatgttagcggagtgtagggctttacttcttgatgt 10486834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 261
Target Start/End: Complemental strand, 34481408 - 34481173
Alignment:
Q  26 aggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacag 125  Q
    ||||| ||||| ||||| ||| |||| | ||||||||  ||||||||||||||||| |||||| |||||||  | ||  || || |||||||||||||||    
T  34481408 aggagagttggtgatggggctgatacttcgttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacag 34481309  T
Q  126 agaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggagga 225  Q
    ||||||||| ||||||||||||| | ||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||     
T  34481308 agaataagtctatgtctgtggcatatttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggg 34481209  T
Q  226 cttgttagcggagtgtagggctttacttcttgatgt 261  Q
     ||| ||| |||||||||||||||||||||||||||    
T  34481208 gttgctagaggagtgtagggctttacttcttgatgt 34481173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 587859 - 587742
Alignment:
Q  144 tggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag 243  Q
    ||||| ||||||| |||||   ||||||||| ||||||| | | ||||||||||| |||||| | |||  ||||||||||||  |||||| |||||||||    
T  587859 tggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtag 587760  T
Q  244 ggctttacttcttgatgt 261  Q
    ||||||||||||||||||    
T  587759 ggctttacttcttgatgt 587742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 35122384 - 35122620
Alignment:
Q  25 taggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaaca 124  Q
    ||||| ||| || ||||| ||| |||||||||||||||   |||||||||| |  |||||||||||| |||  || || |||||| ||||||| ||| |     
T  35122384 taggaaggtgggggatggtgctgatacgttgttttggtctcataggtggtttgatgatgttccttttagtgagcggtttcgtaggttgtttgacttagct 35122483  T
Q  125 gagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggagg 224  Q
    ||||| ||    || ||||||||  |  |||| ||| ||||   ||||||| | ||||||  |||||||||||||||||||||||||   |||||||||     
T  35122484 gagaacaaaaccatttctgtggcgaatatgttctctcttgacctggagcagggaggggttgggtggaggtggagacgtaggttgtgggcttgggaggaga 35122583  T
Q  225 acttgttagcggagtgtagggctttacttcttgatgt 261  Q
      || |||| ||||  |||||||||||| ||||||||    
T  35122584 ctttattagaggagcttagggctttactgcttgatgt 35122620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 27795756 - 27795720
Alignment:
Q  214 gtgggaggaggacttgttagcggagtgtagggcttta 250  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  27795756 gtgggaggaggacttggtagaggagtgtagggcttta 27795720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 49731590 - 49731846
Alignment:
Q  5 tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 104  Q
    ||||||| ||||| |||||||||||||||||||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  49731590 tggtttgttgatcatgtggctaggagggttggagatggagctgacacattgttttggtttgataggtggttaggggatgttcctttttgtgtccgttttc 49731689  T
Q  105 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtag 204  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||| |||||||| |||||||||||||||||||    
T  49731690 gtagactgtttgagttaacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagcagcggggggttatgtggaggtggagacgtag 49731789  T
Q  205 gttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
     |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  49731790 tttgtggcagtgggaggaggagttgttggcggagtgtagggctttacttcttgatgt 49731846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 30167002 - 30167258
Alignment:
Q  5 tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 104  Q
    |||||||||| ||  ||||||||||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |    
T  30167002 tggtttggtggtcacgtggctaggagggttggtgatggttctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttc 30167101  T
Q  105 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtag 204  Q
    ||||  ||||||||||||||||||||||| | |||| ||||||||||||||| |||||||||  |||||||  ||| ||||| ||||||||||| |||||    
T  30167102 gtagattgtttgagttaacagagaataagctcatgtttgtggcagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtag 30167201  T
Q  205 gttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
     ||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||    
T  30167202 attgtggcagtgggaggaggagatgttagcggagtgtaggactttacttcttgatgt 30167258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 55 - 261
Target Start/End: Original strand, 2813208 - 2813414
Alignment:
Q  55 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 154  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || ||||||    
T  2813208 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg 2813307  T
Q  155 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 254  Q
     | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| |||  |||||||||||||||||||    
T  2813308 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc 2813407  T
Q  255 ttgatgt 261  Q
    |||||||    
T  2813408 ttgatgt 2813414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 55 - 261
Target Start/End: Complemental strand, 29309840 - 29309634
Alignment:
Q  55 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 154  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| ||||| ||||||    
T  29309840 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttg 29309741  T
Q  155 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 254  Q
     | ||||| |||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| |||  ||||||||||| |||||||    
T  29309740 ctctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgttacttc 29309641  T
Q  255 ttgatgt 261  Q
    |||||||    
T  29309640 ttgatgt 29309634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 55 - 261
Target Start/End: Original strand, 6176186 - 6176392
Alignment:
Q  55 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 154  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||| ||||||||||| |||||| || || ||||||    
T  6176186 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccgacttg 6176285  T
Q  155 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 254  Q
     | |||||||||||||||| ||||||||   |||||||||||||||||||||| | ||||||||||||||| ||| |||  |||||||||||||||||||    
T  6176286 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggctttacttc 6176385  T
Q  255 ttgatgt 261  Q
    |||||||    
T  6176386 ttgatgt 6176392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 137 - 261
Target Start/End: Complemental strand, 9379447 - 9379323
Alignment:
Q  137 atgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcgg 236  Q
    |||| ||||||| ||||||| | ||||||||| ||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||   |||||||||    
T  9379447 atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg 9379348  T
Q  237 agtgtagggctttacttcttgatgt 261  Q
    |||||||||| ||||| ||||||||    
T  9379347 agtgtagggcattactacttgatgt 9379323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 23602074 - 23601999
Alignment:
Q  186 tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  23602074 tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 23601999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 25872955 - 25873022
Alignment:
Q  194 tggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||||||||||| ||||||||||||||||  ||| ||| ||||||||||||||||||| |||||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttgatgt 25873022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
Q  186 tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag 243  Q
    |||||| |||||||||||||||||||  ||||||||| || |||| ||||||||||||    
T  8943653 tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag 8943596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 14867625 - 14867699
Alignment:
Q  187 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||| |||||||| |||||||||  |||||||||||  || |||| |||||||||||| ||| | ||||||||    
T  14867625 gtggagttggagacggaggttgtgggcgtgggaggaggttttattagaggagtgtagggccttaatacttgatgt 14867699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 46248738 - 46248776
Alignment:
Q  215 tgggaggaggacttgttagcggagtgtagggctttactt 253  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  46248738 tgggaggaagacttgttaggggagtgtagggctttactt 46248776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 48569906 - 48569944
Alignment:
Q  214 gtgggaggaggacttgttagcggagtgtagggctttact 252  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  48569906 gtgggaggaggacttggtagaggagtgtagggctttact 48569944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 21528650 - 21528387
Alignment:
Q  2 ggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtt 101  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21528650 ggatggtttgttgatcatgtggctaggagggttggagatgaagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtt 21528551  T
Q  102 tccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacg 201  Q
    | |||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  21528550 ttcgtaggctgtttgagttaacagagaataagttcatgtctgttggagacttgttctctgttgattcggagcaatggggggttatgtggaggtggagacg 21528451  T
Q  202 taggttgtggcagtgggaggaggacttgttagcggag----tgtagggctttacttcttgatgt 261  Q
    |||||| ||| |||||||||||||| ||||||||| |     ||||||||||||||||||||||    
T  21528450 taggttatggtagtgggaggaggacatgttagcggtggagacgtagggctttacttcttgatgt 21528387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 36306251 - 36306012
Alignment:
Q  20 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 119  Q
    |||||||||||||||||||||||  || |||||||||||||||  |||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||    
T  36306251 gtggctaggagggttggagatggttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagt 36306152  T
Q  120 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 219  Q
    |||| ||||||||| | |||| ||||||||||||||| |||||||||| |||||||  ||||||| | ||||||||||| ||||| |||||||||||| |    
T  36306151 taacggagaataagctcatgtatgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaa 36306052  T
Q  220 ggaggacttgttagcggagtgtagggctttacttcttgat 259  Q
    ||||||  |||||| |||||||||||||||||||||||||    
T  36306051 ggaggagatgttagaggagtgtagggctttacttcttgat 36306012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 38 - 261
Target Start/End: Complemental strand, 37531015 - 37530792
Alignment:
Q  38 gatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagttta 137  Q
    ||||| ||| |||| | ||||||||  ||||||||||||||||| |||||| |||||||  |  |  || || |||||||||||||||||||||||  ||    
T  37531015 gatggggctgatacttcgttttggtctgataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagacta 37530916  T
Q  138 tgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcgga 237  Q
    ||| ||||||||||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||  ||| ||| |||    
T  37530915 tgtatgtggcagacttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagagga 37530816  T
Q  238 gtgtagggctttacttcttgatgt 261  Q
    ||||||||||||||||||||||||    
T  37530815 gtgtagggctttacttcttgatgt 37530792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 111 - 261
Target Start/End: Original strand, 32353061 - 32353211
Alignment:
Q  111 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 210  Q
    |||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  211 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||||| ||||||| ||| |||  ||||||||||||||||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttgatgt 32353211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 55 - 261
Target Start/End: Original strand, 48073139 - 48073345
Alignment:
Q  55 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 154  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || ||||||    
T  48073139 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg 48073238  T
Q  155 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 254  Q
     | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||| ||||||||||||| ||| |||  |||||| ||||||||||||    
T  48073239 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggctttacttc 48073338  T
Q  255 ttgatgt 261  Q
    |||||||    
T  48073339 ttgatgt 48073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 48265548 - 48265632
Alignment:
Q  177 ggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48265548 ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttgatgt 48265632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 30970447 - 30970522
Alignment:
Q  186 tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||||||||||| ||||| ||||||  ||||||||||||  || | |||||||||||||| ||||||||||||||    
T  30970447 tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttgatgt 30970522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 16873332 - 16873406
Alignment:
Q  187 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||||||||||||||||||||||   |||||||||   || |||| ||||  |||||||||||| ||||||||    
T  16873332 gtggaggtggagacgtaggttgtgggcttgggaggagattttattagaggagcttagggctttactgcttgatgt 16873406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 25504839 - 25504907
Alignment:
Q  193 gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  25504839 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 25504907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 15653378 - 15653619
Alignment:
Q  20 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 119  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  15653378 gtggctaggagggttggagatggatctgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagt 15653477  T
Q  120 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 219  Q
    |||| ||||||||| | |||||| ||||||||||||| |||||||||| |||||||  ||||||||| ||||||||||| ||||| ||||||||||||||    
T  15653478 taacggagaataagctcatgtctatggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtggga 15653577  T
Q  220 ggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||||  ||||||||||||||||||||||||||||||||||    
T  15653578 ggaggagatgttagcggagtgtagggctttacttcttgatgt 15653619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 46624160 - 46623966
Alignment:
Q  20 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 119  Q
    ||||||||||||||| |||||||  || |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || || ||||||||||    
T  46624160 gtggctaggagggttagagatggttctgatacgttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagt 46624061  T
Q  120 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcag 214  Q
    |||| ||||||||| | |||||||||||||||||||| |||||||||| |||||||  |||  |||| ||||||||||| ||||| |||||||||    
T  46624060 taacggagaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggcag 46623966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 55 - 261
Target Start/End: Complemental strand, 13440485 - 13440279
Alignment:
Q  55 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 154  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || ||||||    
T  13440485 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg 13440386  T
Q  155 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 254  Q
     | |||||||||||||||| ||||||||   ||||||||||||||||||| || ||| ||||||||||||| ||| |||  |||||| ||||||||||||    
T  13440385 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggctttacttc 13440286  T
Q  255 ttgatgt 261  Q
    |||||||    
T  13440285 ttgatgt 13440279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 55 - 261
Target Start/End: Original strand, 12378436 - 12378639
Alignment:
Q  55 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 154  Q
    ||||||||  ||||||||| |||||||||||||| | ||||  || |  | ||| |||||||||||||  ||||||||| | |||||||||||| | |||    
T  12378436 gttttggtatgataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttg 12378535  T
Q  155 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 254  Q
    || | |||| | ||| ||| |||||||| ||||| |||| |||| || |||||||||||||||||||||||  |||||||||||||||||||   |||||    
T  12378536 ttctttgttaagtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtagggc---acttc 12378632  T
Q  255 ttgatgt 261  Q
    |||||||    
T  12378633 ttgatgt 12378639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 45943152 - 45943077
Alignment:
Q  186 tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||||||||||| |||| || ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  45943152 tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgt 45943077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 252
Target Start/End: Complemental strand, 43105669 - 43105546
Alignment:
Q  129 ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggactt 228  Q
    |||||| | |||| |||||||||||||| |||  |  |||| | || ||||| | ||||||||||||||| || ||||||||||| |||||||||||  |    
T  43105669 ataagtctttgtcggtggcagacttgttctctactagttcgcaacaatggggagatttgtggaggtggaggcgcaggttgtggcaatgggaggaggagat 43105570  T
Q  229 gttagcggagtgtagggctttact 252  Q
    |||||| ||||||||||| |||||    
T  43105569 gttagcagagtgtagggcgttact 43105546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 41339825 - 41339750
Alignment:
Q  187 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgtc 262  Q
    |||||||||| || | |||||||||  |||||||||||| || |||| |||||||||| |||||||  ||||||||    
T  41339825 gtggaggtggcgatgcaggttgtgggcgtgggaggaggaattattagaggagtgtaggactttactatttgatgtc 41339750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 19728787 - 19728713
Alignment:
Q  187 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||| |||||||| |||||||||  |||||||||||  || |||| |||||||||||  ||||| ||||||||    
T  19728787 gtggagttggagacggaggttgtgggcgtgggaggaggttttattagaggagtgtagggtcttactacttgatgt 19728713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 27723973 - 27724011
Alignment:
Q  215 tgggaggaggacttgttagcggagtgtagggctttactt 253  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  27723973 tgggaggaagacttgttaggggagtgtagggctttactt 27724011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 261
Target Start/End: Complemental strand, 46623964 - 46623931
Alignment:
Q  228 tgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||||| ||||||||||||||||||||||||||    
T  46623964 tgttagcagagtgtagggctttacttcttgatgt 46623931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 45992870 - 45992802
Alignment:
Q  193 gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  45992870 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 45992802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 7452819 - 7452578
Alignment:
Q  20 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 119  Q
    |||||||||||||||||||||||  || |||||||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||    
T  7452819 gtggctaggagggttggagatggttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagt 7452720  T
Q  120 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 219  Q
    |||| ||||||||| |||||||||||||||||||||| |||||||||| |||||||  ||||||| | ||||||||||| ||||| ||||||||||||||    
T  7452719 taacggagaataagcttatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggga 7452620  T
Q  220 ggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||  || |||| |||||||||||||||||||||||||||    
T  7452619 ggaggtgttattagaggagtgtagggctttacttcttgatgt 7452578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 56 - 261
Target Start/End: Original strand, 16420719 - 16420924
Alignment:
Q  56 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt 155  Q
    |||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||||| ||||||     
T  16420719 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc 16420818  T
Q  156 tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttct 255  Q
    | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| |||  ||| ||||||||||||||||    
T  16420819 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttct 16420918  T
Q  256 tgatgt 261  Q
     |||||    
T  16420919 cgatgt 16420924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 19384572 - 19384624
Alignment:
Q  209 tggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttgatgt 19384624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
Q  187 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact 252  Q
    |||||||||| | |||| |||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  12134628 gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact 12134563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 13879354 - 13879390
Alignment:
Q  214 gtgggaggaggacttgttagcggagtgtagggcttta 250  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  13879354 gtgggaggaggacttggtagaggagtgtagggcttta 13879390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 45422002 - 45421745
Alignment:
Q  5 tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 104  Q
    |||||||||| ||  ||||||||||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |    
T  45422002 tggtttggtggtcacgtggctaggagggttggtgatggttctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttc 45421903  T
Q  105 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcag-tggggggttttgtggaggtggagacgta 203  Q
    ||||  ||||||||||||||||||||||| | |||| ||||||||||||||| |||||||||  |||||||  ||||  |||| ||||||||||| ||||    
T  45421902 gtagattgtttgagttaacagagaataagctcatgtatgtggcagacttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgta 45421803  T
Q  204 ggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    | |||| |||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  45421802 gattgtcgcagtgggaggaggagatgttagcggagtgtagggcttttcttcttgatgt 45421745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 56 - 261
Target Start/End: Complemental strand, 13550555 - 13550350
Alignment:
Q  56 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt 155  Q
    |||||||| ||||||||| ||||||| | |||| || ||||  | ||  || || |||||||||||||||||||||||| ||| |  ||||| ||||||     
T  13550555 ttttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgc 13550456  T
Q  156 tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttct 255  Q
    | ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||| ||||||||| ||||    
T  13550455 tttctgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtgcagggctttaattct 13550356  T
Q  256 tgatgt 261  Q
    ||||||    
T  13550355 tgatgt 13550350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 55 - 257
Target Start/End: Original strand, 26894320 - 26894522
Alignment:
Q  55 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 154  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||  | ||||||    
T  26894320 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttg 26894419  T
Q  155 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 254  Q
     | ||||||| |||||||| |||||||    |||||||||||||||||||||| ||||||||||||||||| ||| |||  |||||||||||||||||||    
T  26894420 ctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc 26894519  T
Q  255 ttg 257  Q
    |||    
T  26894520 ttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 55 - 257
Target Start/End: Original strand, 26899759 - 26899961
Alignment:
Q  55 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 154  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||  | ||||||    
T  26899759 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttg 26899858  T
Q  155 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 254  Q
     | ||||||| |||||||| |||||||    |||||||||||||||||||||| ||||||||||||||||| ||| |||  |||||||||||||||||||    
T  26899859 ctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc 26899958  T
Q  255 ttg 257  Q
    |||    
T  26899959 ttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 111 - 261
Target Start/End: Complemental strand, 43627875 - 43627725
Alignment:
Q  111 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 210  Q
    |||||||||||||||||||||||| |||||  ||||| |||||| | ||| |||||||||||  ||||||||   |||||||||||||||||||||| ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  211 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 43627725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 261
Target Start/End: Original strand, 31085452 - 31085551
Alignment:
Q  162 ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||||| ||||||||||||| | |||||||||||||| | |||||||| ||||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  31085452 ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttgatgt 31085551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 33548197 - 33548098
Alignment:
Q  162 ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  33548197 ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 33548098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 13551008 - 13550882
Alignment:
Q  56 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt 155  Q
    |||||||| ||||||||| ||||||| | |||| || ||||  | ||  || || |||||||||||||||||||||||| ||| |  ||||| ||||||     
T  13551008 ttttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgc 13550909  T
Q  156 tatctgttgattcggagcagtgggggg 182  Q
    | |||||||||||||||||||||||||    
T  13550908 tttctgttgattcggagcagtgggggg 13550882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 22052911 - 22052853
Alignment:
Q  203 aggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  22052911 aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgt 22052853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 36804196 - 36804137
Alignment:
Q  203 aggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgtc 262  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  36804196 aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttactatttgatgtc 36804137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 36804400 - 36804352
Alignment:
Q  214 gtgggaggaggacttgttagcggagtgtagggctttacttcttgatgtc 262  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  36804400 gtgggaggaggacttgttagaggagtgtagggctttactatttgatgtc 36804352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 26679266 - 26679225
Alignment:
Q  56 ttttggttggataggtggttaggggatgttcctttttgtgtc 97  Q
    |||||||||||||||||| | || ||||||||||||||||||    
T  26679266 ttttggttggataggtgggttggtgatgttcctttttgtgtc 26679225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 40176941 - 40176905
Alignment:
Q  214 gtgggaggaggacttgttagcggagtgtagggcttta 250  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  40176941 gtgggaggaggacttggtagaggagtgtagggcttta 40176905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 4207 - 4337
Alignment:
Q  5 tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 104  Q
    ||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4207 tggtttgttgatcatgtggctcggagggttggagatggagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttc 4306  T
Q  105 gtaggctgtttgagttaacagagaataagtt 135  Q
    |||||||||||||||||| ||||||||||||    
T  4307 gtaggctgtttgagttaatagagaataagtt 4337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 74 - 261
Target Start/End: Complemental strand, 8088 - 7901
Alignment:
Q  74 ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 173  Q
    |||||||||||||| || ||||||||||| |||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  174 agtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||  |||| |||| ||||||||||| ||||| ||||||||||||||||||||  |||||| |||||||| ||||||||||||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttgatgt 7901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 261
Target Start/End: Complemental strand, 25318315 - 25318080
Alignment:
Q  26 aggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacag 125  Q
    ||||| ||||| ||||  ||| |||| | ||||||||| ||||||||| || |||| | |||| || ||||  | ||  || || ||||||||||||||     
T  25318315 aggagagttggtgatgaggctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaa 25318216  T
Q  126 agaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggagga 225  Q
    |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||||| |||||||||||||| ||||||||| |||||||||||||||||    
T  25318215 agaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggagga 25318116  T
Q  226 cttgttagcggagtgtagggctttacttcttgatgt 261  Q
     ||| ||| |||||||||||||||||||||||||||    
T  25318115 gttgctagaggagtgtagggctttacttcttgatgt 25318080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 261
Target Start/End: Complemental strand, 26205809 - 26205574
Alignment:
Q  26 aggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacag 125  Q
    ||||| ||||| ||||  ||| |||| | ||||||||| ||||||||| || |||| | |||| || ||||  | ||  || || ||||||||||||||     
T  26205809 aggagagttggtgatgaggctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaa 26205710  T
Q  126 agaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggagga 225  Q
    |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||||| |||||||||||||| ||||||||| |||||||||||||||||    
T  26205709 agaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggagga 26205610  T
Q  226 cttgttagcggagtgtagggctttacttcttgatgt 261  Q
     ||| ||| |||||||||||||||||||||||||||    
T  26205609 gttgctagaggagtgtagggctttacttcttgatgt 26205574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 55 - 261
Target Start/End: Original strand, 23347175 - 23347381
Alignment:
Q  55 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 154  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || ||||||    
T  23347175 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccgacttg 23347274  T
Q  155 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 254  Q
     | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| |||  |||||||||||||||||||    
T  23347275 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc 23347374  T
Q  255 ttgatgt 261  Q
    |||||||    
T  23347375 ttgatgt 23347381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 261
Target Start/End: Complemental strand, 15674205 - 15674051
Alignment:
Q  111 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtgggg----ggttttgtggaggtggagacgtaggt 206  Q
    ||||||||||||| |||||||||| |||||||||||| |||||  | ||||||||||| ||||  |||||    ||   |||||||||||||||||||||    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  207 tgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||||||||||||||||| ||| |||  ||||| ||||||||||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttgatgt 15674051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 33630378 - 33630323
Alignment:
Q  206 ttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| || |||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtagggctttattttttgatgt 33630323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 261
Target Start/End: Complemental strand, 1683299 - 1683266
Alignment:
Q  228 tgttagcggagtgtagggctttacttcttgatgt 261  Q
    ||||||||||||||||||||||||||||||||||    
T  1683299 tgttagcggagtgtagggctttacttcttgatgt 1683266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 4474998 - 4474935
Alignment:
Q  187 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggcttta 250  Q
    |||||||||||||||||||||||||  |||||||||| | || |||| ||||| |||| |||||    
T  4474998 gtggaggtggagacgtaggttgtgggcgtgggaggagaatttattagaggagtttaggacttta 4474935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 19255934 - 19255866
Alignment:
Q  193 gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  19255934 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 19255866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 33640212 - 33640144
Alignment:
Q  193 gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  33640212 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 33640144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 15490 - 15564
Alignment:
Q  187 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 261  Q
    |||||||||| | || || ||||||  ||||||||||||  |||||| ||||||||||||||||||  |||||||    
T  15490 gtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttactatttgatgt 15564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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