View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6791_low_13 (Length: 242)
Name: NF6791_low_13
Description: NF6791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6791_low_13 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 20018625 - 20018860
Alignment:
| Q |
7 |
atggacatcataatgattcaaaagggattttacaatttatcttaataaaagacggattgttcctctagtttagctaatccacnnnnnnnnncttttcatt |
106 |
Q |
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| T |
20018625 |
atggacatcataatgattcaaaagggattttacaagttatcttaataaaagacggattgttcctctagtttagctaatccacaaaaaaaaacttttcatt |
20018724 |
T |
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| Q |
107 |
tatactatgaaaacgcataaaactttataataccatattttttagttgagtatcaacatcatggtcagtgtcagattccttgacggctgtccccaaattc |
206 |
Q |
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| T |
20018725 |
tatactatgaaaacgcataaaactttataataccatattttttagttgagtatcaacatcaaggtcagtgtcagattccttgacggctgtccccaaattc |
20018824 |
T |
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| Q |
207 |
tgtgccagtccagatggattttctacaacaaaccat |
242 |
Q |
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| T |
20018825 |
tgtgccagtccagatggattttctacaacaaaccat |
20018860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 98 - 234
Target Start/End: Original strand, 20028704 - 20028840
Alignment:
| Q |
98 |
cttttcatttatactatgaaaacgcataaaactttataataccatattttttagttgagtatcaacatcatggtcagtgtcagattccttgacggctgtc |
197 |
Q |
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| T |
20028704 |
cttttcatttatgctaccaaaatgcataaaacattataataccatattttttagttgagcatcaacatcaatgtcagtgtcagattccttgacgactgtc |
20028803 |
T |
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| Q |
198 |
cccaaattctgtgccagtccagatggattttctacaa |
234 |
Q |
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| T |
20028804 |
accaaattctgagccagcccagatggattttctacaa |
20028840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 234
Target Start/End: Original strand, 20009267 - 20009403
Alignment:
| Q |
98 |
cttttcatttatactatgaaaacgcataaaactttataataccatattttttagttgagtatcaacatcatggtcagtgtcagattccttgacggctgtc |
197 |
Q |
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| T |
20009267 |
cttttcatttatgctacgaaagcacataaaactttataataccatattttttagttgagcatcaacatcaatgtcattgtcagattccttgacgactgtc |
20009366 |
T |
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| Q |
198 |
cccaaattctgtgccagtccagatggattttctacaa |
234 |
Q |
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| T |
20009367 |
cctaaattctgagccatcccagatggattttctacaa |
20009403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 12573715 - 12573594
Alignment:
| Q |
115 |
gaaaacgcataaaactttataataccatattttttagttgagtatcaacat---catggtcagtgtcagattccttgacggctgtccccaaattctgtgc |
211 |
Q |
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| T |
12573715 |
gaaaacgcataaaagtt-acaataccatatttttaagttgagcatcgacattaacaatgtcggcatcagattccttgatgactgtccccaaattctgagc |
12573617 |
T |
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| Q |
212 |
cagtccagatggattttctacaa |
234 |
Q |
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| T |
12573616 |
cagaccagatgaattttctacaa |
12573594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 12573844 - 12573780
Alignment:
| Q |
13 |
atcataatgattcaaaagggattttacaatttatcttaataaaagacggattgttcctctagttt |
77 |
Q |
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| T |
12573844 |
atcataatgattcaaaagagattttactagttatcttagtaaaaaactgattattcttctagttt |
12573780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 48300256 - 48300332
Alignment:
| Q |
12 |
catcataatgattcaaaagggattttacaatttatcttaataaaagacggattgttcctctagtttagctaatccac |
88 |
Q |
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| T |
48300256 |
catcataatgattcaaaagagattttacaagttatcttagtgaaaaattaattgttcttatattttagctaatccac |
48300332 |
T |
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