View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6791_low_3 (Length: 365)
Name: NF6791_low_3
Description: NF6791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6791_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 364
Target Start/End: Complemental strand, 16161008 - 16160659
Alignment:
| Q |
10 |
acatcacataaaagagacacacaacataaaaattcaaaaggaacaacataagagggagtccatatctccaaacaaaatgaagcaaacaacaacaaacata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16161008 |
acatcacataaaagagacacacaacataaaaattcaaaaggaacaacataagagggagtccacatctccaaacaaaatgaagcaaacaacaacaaacata |
16160909 |
T |
|
| Q |
110 |
gacacaatggttcaattgatgcactaatgcagccattattacaaacgataactcagacagttcgacaaccaaccactacgttcaaccctttctaatcctt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16160908 |
gacacaatggttcaattgatgcactaatgcagccattactacaaacgataactcagacagttcgacaaccaaccactgcgttcaaccctttctaatcctt |
16160809 |
T |
|
| Q |
210 |
ccatatttctaggcaagagtctcatcatcagagtcaacttcaacaaaggcagaagaaagatttcttttgacaccagatccattagccttgaaagcagatt |
309 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
16160808 |
ccatatttctgggcaagagtctcatcatcagagtcaacttcaacaaaggcagaagaaagatttcttttggcaccagatccat-----ttgaaagcagatt |
16160714 |
T |
|
| Q |
310 |
catgttcagcaccaaaggccaaggaagtactctcaacagaaccggcaacaccaaa |
364 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16160713 |
catgttcagcaccaacggccaaggaagtactctcagcagaaccggcaacaccaaa |
16160659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University