View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6791_low_4 (Length: 335)
Name: NF6791_low_4
Description: NF6791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6791_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 27430654 - 27430334
Alignment:
| Q |
11 |
agatggacatcaatggagaaagtatgggcnnnnnnngatcttgcacaccgattttccaaggnnnnnnnnnnnnnnnttttacgagtttaattaagcacta |
110 |
Q |
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| T |
27430654 |
agatggtcatcaatggagaaagtatgggcaaaaaaagatcttgcacaccgattttccaaggtatatatat------ttttacgagtttaattaagcacaa |
27430561 |
T |
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| Q |
111 |
acttcactatttgaacacattatcatgttaattattgattttcaaattaattaattttcactatgggaatatatatttatttatat--gctttgcaggaa |
208 |
Q |
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| T |
27430560 |
acttcactatttgaacaaattatcatgttaattattgattttcaaattaattaattttcactatgggaatatatatttatttatatatgctttgcaggaa |
27430461 |
T |
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| Q |
209 |
ctattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatccacctctttacaaaacaacctactat |
308 |
Q |
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| T |
27430460 |
ctattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatccacctctttacaaaacaacctactat |
27430361 |
T |
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| Q |
309 |
gcccatcatacttgtagaatcttgcaa |
335 |
Q |
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| T |
27430360 |
gcccatcatacttgtagaatcttgcaa |
27430334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 199 - 335
Target Start/End: Complemental strand, 27447717 - 27447581
Alignment:
| Q |
199 |
tttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatccacctctttacaaaac |
298 |
Q |
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| T |
27447717 |
tttgcaggaactattacagatgcactcacaaaaatgatcaaggttgcaaagcaataaaacaagtccaaagaattcaagaggatccacctcttcacaggac |
27447618 |
T |
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| Q |
299 |
aacctactatgcccatcatacttgtagaatcttgcaa |
335 |
Q |
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| T |
27447617 |
aacctattcaggccatcatacttgtagaatcttgcaa |
27447581 |
T |
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