View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6791_low_5 (Length: 330)
Name: NF6791_low_5
Description: NF6791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6791_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 53320808 - 53321123
Alignment:
| Q |
1 |
attgttgtggctccaacggttaatatccagggagcgtcattagaaactgtactcggcttcggtccagaatttccagcagagcaaaccactacgatgccgt |
100 |
Q |
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| T |
53320808 |
attgttgtggctccaacggttaatatccagggagcatcattagaaactgtactcggcttccgtccagaattcctagcagagcaaaccaccacgatgcctc |
53320907 |
T |
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| Q |
101 |
gctccatggcgtggaaaactccaattgcaattgagtcagctttcaagccaggtttggaactaggatcatacaaaccaaatgagagggaaagcacatcaac |
200 |
Q |
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| T |
53320908 |
gctccatggcatggaaagctccaattgcagttgagtcagttttcaagtcaggtttggaactaggatcatccggaccaaatgacagggaaagcacatcaac |
53321007 |
T |
|
| Q |
201 |
tccatcggcgattgtatcgtggaatgccgcaaggacggtgaagttgtcacagtaaccataacgagagcacactttgtagatcaccaaccttgattgagga |
300 |
Q |
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| T |
53321008 |
tccatcggcgatggcatcatcgaatgctgcaaggacagtggagtcgtcacagtaacc---accagagcacactttgtaaatcgccaaccttgattgagga |
53321104 |
T |
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| Q |
301 |
gaccccccttttgatgtcc |
319 |
Q |
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| T |
53321105 |
gaccccccttttgatgtcc |
53321123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 48372488 - 48372299
Alignment:
| Q |
14 |
caacggttaatatccagggagcgtcattagaaactgtactcggcttcggtccagaatttccagcagagcaaaccactacgatgccgtgctccatggcgtg |
113 |
Q |
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| T |
48372488 |
caaccgttaatatccaaggtgcatcattaacaacagtacttagctctggaccagaattcccagcggagcaaaccaccacgatgccgtgctccatggcatg |
48372389 |
T |
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| Q |
114 |
gaaaactccaattgcaattgagtcagctttcaagccaggtttggaactaggatcatacaaaccaaatgagagggaaagcacatcaactccatc |
206 |
Q |
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| T |
48372388 |
gaacgctccaattgcaatcacgtcggttttcaagtcaggttgggaactcggacc---cctaccaagggagagcgaaagcacatcaactccatc |
48372299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 53432186 - 53432313
Alignment:
| Q |
4 |
gttgtggctccaacggttaatatccagggagcgtcattagaaactgtactcggcttcggtccagaatttccagcagagcaaaccactacgatgccgtgct |
103 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||||| || |||||| || |||||||| ||| || |||| ||||||||| ||||||||| ||| |
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| T |
53432186 |
gttgtggcaccaacggttaatatccaaggagcatcattagtaagtgtacttctctccggtccagcattcccggcagcgcaaaccaccacgatgccgcgct |
53432285 |
T |
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| Q |
104 |
ccatggcgtggaaaactccaattgcaat |
131 |
Q |
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| T |
53432286 |
ccacggcatggaacgctcctattgcaat |
53432313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 26097572 - 26097712
Alignment:
| Q |
14 |
caacggttaatatccagggagcgtcattagaaactgtactcggcttcggtccagaatttccagcagagcaaaccactacgatgccgtgctccatggcgtg |
113 |
Q |
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|||| |||| |||||| |||||||||||| ||||||||| ||| |||||||||||| ||||||||||||| ||| || |||||| |||| | || || |
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| T |
26097572 |
caaccgttagtatccaaggagcgtcattaacaactgtactttgctccggtccagaattcccagcagagcaaatcaccacaatgccgcgctctacagcatg |
26097671 |
T |
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| Q |
114 |
gaaaactccaattgcaattgagtcagctttcaagccaggtt |
154 |
Q |
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|||| |||||||||| ||| ||| | ||||||| |||||| |
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| T |
26097672 |
gaaagctccaattgctattacgtccgttttcaagtcaggtt |
26097712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 53309038 - 53309137
Alignment:
| Q |
7 |
gtggctccaacggttaatatccagggagcgtcattagaaactgtactcggcttcggtccagaatttccagcagagcaaaccactacgatgccgtgctcca |
106 |
Q |
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|||||| |||| ||||||||||| |||||||||||| ||||||||| | | |||||| ||| |||||||||||||| || || ||||| ||||||| |
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| T |
53309038 |
gtggctacaacagttaatatccaaggagcgtcattaacaactgtactttgtgttggtccatcattcccagcagagcaaacaaccactatgccatgctcca |
53309137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 53425295 - 53425351
Alignment:
| Q |
263 |
gagagcacactttgtagatcaccaaccttgattgaggagaccccccttttgatgtcc |
319 |
Q |
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| T |
53425295 |
gagagcacactttgtaaattgccaacctcgattcaggagacccaccttttgctgtcc |
53425351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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