View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6791_low_6 (Length: 295)
Name: NF6791_low_6
Description: NF6791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6791_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 42009738 - 42009466
Alignment:
| Q |
9 |
tggacatcaagctctgactcacatctcagaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctc |
108 |
Q |
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| T |
42009738 |
tggacatcaagctctgactcacatctctgaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctc |
42009639 |
T |
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| Q |
109 |
tttttacatactccaaatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42009638 |
tttttacatactccaaatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaag |
42009539 |
T |
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| Q |
209 |
ctccaaagtgacacttttcacttgttcaaggtccggcatctttttattttcaatttccttctgaatagctgat |
281 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42009538 |
ctccaaagcgacacttttcacttgttcaaggtccgacatctttttattttcaatttccttctgaatagctgat |
42009466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 1245074 - 1244804
Alignment:
| Q |
11 |
gacatcaagctctgactcacatctcagaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctt |
110 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245074 |
gacatcaagctctgactcacatctctgaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctt |
1244975 |
T |
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| Q |
111 |
tttacatactccaaatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagct |
210 |
Q |
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| T |
1244974 |
tttacatactccaaatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagct |
1244875 |
T |
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| Q |
211 |
ccaaagtgacacttttcacttgttcaaggtccggcatctttttattttcaatttccttctgaatagctgat |
281 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
1244874 |
ccaaagtgacacttttcacttgttcaaggtccgacatctttttattttcaattttcttctgaatagctgat |
1244804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 23787589 - 23787504
Alignment:
| Q |
144 |
accaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagctccaaagtgacacttttcac |
229 |
Q |
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|||||||||| ||||| | ||||||| ||| |||||||||||||| ||| || ||||||||||||||| |||| ||| ||||||| |
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| T |
23787589 |
accaagcttcgaagagtgttttcttcatctactactttctgcagtgattctttcgcaccatcaagctccgaagtaacagttttcac |
23787504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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