View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6791_low_9 (Length: 287)
Name: NF6791_low_9
Description: NF6791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6791_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 7153724 - 7153447
Alignment:
| Q |
1 |
tagtagagactggtcaaacgtagagacatacaagcggaagaggaatggaggacttagacagactcaatgactttatgcatttaactagaagtgcaacttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7153724 |
tagtagagactggtcaaacgtagagacatacaagcggaagaggaatggaggacttagacagactcaataactttatgcatttaactagaagtgcaacttt |
7153625 |
T |
|
| Q |
101 |
atgcatttaattagaagtgaaactttatgcattttttaaaacaagtgcaactttatgtacttgactggaaattcaactttgtgtattttgagtacaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7153624 |
atgcatttaattagaagtgaaactttatgcattttttaaaacaagtgcaactttatgtacttgactagaaattcaactttgtgtattttgagtacaattt |
7153525 |
T |
|
| Q |
201 |
tgatttatgtattttgatcacaaatgcaactttatatatgttgatctataattgttaaccttacttcaatttgatgtc |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7153524 |
tgatttatgtattttgatcacaaatgcaactttatatatgttgatctataattgttaaccttacttcaatttgatgtc |
7153447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 13237346 - 13237069
Alignment:
| Q |
1 |
tagtagagactggtcaaacgtagagacatacaagcggaagaggaatggaggacttagacagactcaatgactttatgcatttaactagaagtgcaacttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13237346 |
tagtagagactggtcaaacgtagagacatacaagcggaagaggaatggaggacttagacagactcaataactttatgcatttaactagaagtgcaacttt |
13237247 |
T |
|
| Q |
101 |
atgcatttaattagaagtgaaactttatgcattttttaaaacaagtgcaactttatgtacttgactggaaattcaactttgtgtattttgagtacaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13237246 |
atgcatttaattagaagtgaaactttatgcattttttaaaacaagtgcaactttatgtacttgactagaaattcaactttgtgtattttgagtacaattt |
13237147 |
T |
|
| Q |
201 |
tgatttatgtattttgatcacaaatgcaactttatatatgttgatctataattgttaaccttacttcaatttgatgtc |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13237146 |
tgatttatgtattttgatcacaaatgcaactttatatatgttgatctataattgttaaccttacttcaatttgatgtc |
13237069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 12316323 - 12316183
Alignment:
| Q |
49 |
aggacttagacagactcaatgactttatgcatttaactagaagtgcaactttatgcatttaattagaagtgaaactttatgcattttttaaaacaagtgc |
148 |
Q |
| |
|
|||||||| ||| ||||||| | |||||||||| |||||| ||| |||||||||||| |||||||||| || |||||| |||||| ||||||||||| |
|
|
| T |
12316323 |
aggacttacacaaactcaattatggtatgcatttagttagaagagcagctttatgcattttattagaagtgcaattttatggatttttcaaaacaagtgc |
12316224 |
T |
|
| Q |
149 |
aactttatgtacttgactggaaattcaactttgtgtatttt |
189 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
12316223 |
aactttatgtacttgaatagaaatctaactttgtgtatttt |
12316183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 8704752 - 8704701
Alignment:
| Q |
51 |
gacttagacagactcaatgactttatgcatttaactagaagtgcaactttat |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
8704752 |
gacttagatagactcaatgactttatgcatttcactagaattgcaattttat |
8704701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University