View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_high_10 (Length: 326)
Name: NF6792_high_10
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 43541153 - 43541469
Alignment:
| Q |
1 |
aataactgaattttcatccctaatacctaagatgtggataattatgcaatcaaaacatattaacattttgatatatacacatgagtacatgaccatattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43541153 |
aataactgaattttcatccctaatacctaagatgtggataattatgcaatcaaaacatattaacattttgatatatacacatgagtacatgaccatattt |
43541252 |
T |
|
| Q |
101 |
actatttagataatcgcaaattattctagttttaaatgagtttggatcacactcctaaagctagctcaaaggattagagtgcccaagcacatatatacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43541253 |
actatttagataatcgcaaattattctagttttaaatgagtttggatcacactcctaaagctagctcaaaggattagagtgcccaagcacatatatacat |
43541352 |
T |
|
| Q |
201 |
ccaacagcctgggaaccttagcaaagtggaactccaatacaacttcaatatctagcaccttagagcacaaaatttgagattgagatcatcctaaagtttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43541353 |
ccaacagcctgggaaccttagcaaagtggaactccaatacaacttcaatatctagcaccttagagcacaaaatttgagattgagatcatcctaaagtttc |
43541452 |
T |
|
| Q |
301 |
tgagagaacctgatgtc |
317 |
Q |
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||||||||||||||||| |
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| T |
43541453 |
tgagagaacctgatgtc |
43541469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 10514994 - 10514890
Alignment:
| Q |
133 |
taaatgagtttggatcacactcctaaagctagctcaaaggattagagtgcccaagcacatatatacatccaacagcctgggaaccttagcaaagtggaac |
232 |
Q |
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| T |
10514994 |
taaatgggtttggatctcatcccaaaagctacctcaaaggatgagaatgcccaaacacttttgtacagccaacagcccgggaaccttagcaacgtgggac |
10514895 |
T |
|
| Q |
233 |
tccaa |
237 |
Q |
| |
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||||| |
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| T |
10514894 |
tccaa |
10514890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 2922163 - 2922256
Alignment:
| Q |
157 |
aaagctagctcaaaggattagagtgcccaagcacatatatacatccaacagcctgggaaccttagcaaagtggaactccaatacaacttcaata |
250 |
Q |
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|||||||||||||||||| ||||| |||| ||||| |||||||| ||| || | ||||| ||||| || |||||||||||||| ||||||| |
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| T |
2922163 |
aaagctagctcaaaggatgagagtatccaaacacatttatacatctgacaacccagaaacctgagcaatgtcgaactccaatacaatttcaata |
2922256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 2717721 - 2717790
Alignment:
| Q |
181 |
gcccaagcacatatatacatccaacagcctgggaaccttagcaaagtggaactccaatacaacttcaata |
250 |
Q |
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| T |
2717721 |
gcccaaacacatttatacatccaatagctcaggaacttgagcaatgtgggactccaatacaacttcaata |
2717790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 2717922 - 2718014
Alignment:
| Q |
157 |
aaagctagctcaaaggattagagtgcccaagcacatatatacatccaacagcctgggaaccttagcaaagtggaactccaatacaacttcaata |
250 |
Q |
| |
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||||||||||||||||| || ||| ||||||||| ||||||||||||| ||| |||||| ||||| || | |||| ||||||| ||||||| |
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| T |
2717922 |
aaagctagctcaaaggacgagggtggtcaagcacatttatacatccaacaacct-ggaacccgagcaatgttggactcgaatacaaattcaata |
2718014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 44019626 - 44019717
Alignment:
| Q |
157 |
aaagctagctcaaaggattagagtgcccaagcacatatatacatccaacagcctgggaaccttagcaaagtggaactccaatacaacttcaata |
250 |
Q |
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|||| ||||||||||||| || |||||||| ||||| |||||||| |||| ||| || || ||||| |||| |||||||||||||||||||| |
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| T |
44019626 |
aaagttagctcaaaggatgagggtgcccaaacacatttatacatcaaacaacctagg--ccagagcaatgtgggactccaatacaacttcaata |
44019717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 36496258 - 36496325
Alignment:
| Q |
157 |
aaagctagctcaaaggattagagtgcccaagcacatatatacatccaacagcctgggaaccttagcaa |
224 |
Q |
| |
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||||||||||||| |||| || ||||| || || || |||||||||||||||| |||||||| ||||| |
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| T |
36496258 |
aaagctagctcaatggatgagggtgcctaaacagatttatacatccaacagccggggaacctgagcaa |
36496325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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