View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_high_14 (Length: 240)
Name: NF6792_high_14
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_high_14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 54156979 - 54157210
Alignment:
| Q |
9 |
acatcatcaacaaccaagcctgatagtttaaaacatgaccatatataaaagtgaaacaatgacaattaaattaactttcaatctgctcaatcaaatttca |
108 |
Q |
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| T |
54156979 |
acatcatcaacaaccaagcctgatagtttaaaagatgactatatataaaagtgaaacaatgacaattaaattaactttcaatctgctcaatcaaatttca |
54157078 |
T |
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| Q |
109 |
atttgaaaatcaaagcatacagacaggtacacagactaccgtatgctaaatgttggtattcaaaaagtttggatgaaatcataataacaagacgtgtcat |
208 |
Q |
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| T |
54157079 |
atttgaaaatcaaagcatacagacaggtacacagactaccgtatgctaaatgttggtattcaaaaagtttggatgaaatcataataacaagatgtgtcat |
54157178 |
T |
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| Q |
209 |
tcaccacattaaatagctatttatctaaccat |
240 |
Q |
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| T |
54157179 |
tcaccacattaaatagctatttatctaaccat |
54157210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 53869224 - 53869131
Alignment:
| Q |
151 |
atgctaaatgttggtattcaaaaagttt--ggatgaaatcataataacaagacgtgtca--ttcaccacattaaatagctatttatctaaccat |
240 |
Q |
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|||||||||||||||||||| ||||||| | |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |
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| T |
53869224 |
atgctaaatgttggtattcataaagtttttgaatgaaatcataataacaagacgagtcacattcaccacattaaatagctatttatttaaccat |
53869131 |
T |
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