View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6792_high_3 (Length: 665)

Name: NF6792_high_3
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6792_high_3
NF6792_high_3
[»] chr3 (4 HSPs)
chr3 (238-461)||(44989526-44989749)
chr3 (502-642)||(44989747-44989871)
chr3 (149-183)||(44989495-44989529)
chr3 (8-116)||(54417046-54417153)
[»] chr5 (1 HSPs)
chr5 (8-115)||(16570521-16570627)
[»] chr8 (2 HSPs)
chr8 (10-116)||(26835618-26835723)
chr8 (10-101)||(13580397-13580487)
[»] chr4 (1 HSPs)
chr4 (15-116)||(36071581-36071681)
[»] chr2 (1 HSPs)
chr2 (10-116)||(40876949-40877054)
[»] chr6 (2 HSPs)
chr6 (10-62)||(9815749-9815801)
chr6 (10-106)||(12174320-12174415)
[»] chr1 (1 HSPs)
chr1 (10-62)||(8246797-8246849)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 238 - 461
Target Start/End: Original strand, 44989526 - 44989749
Alignment:
Q  238 tcatgtataggtgctctgttgctcccccaaacatgtaacgagtgctgaaagtgtgttccaccatatagaatagaaaaattgtacattcaatcaaatacga 337  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  44989526 tcatgtataggtgctctgttgctgccccaaacatgtaacgagtgctgaaagtgtgtaacaccatatagaatagaaaaattgtacattcaatcaaatacga 44989625  T
Q  338 ttctacttttaaattaagtcacgttatggtttatgtcatagtcaagataaaagatacaagcaattatatcttatctaaatctacnnnnnnnatatcttat 437  Q
    || | |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||       |||||||||    
T  44989626 ttatccttttaaattaagtaacgttatggtttatgtcatagtcaagataaaagatagaagcaattatatcttatctaaatcaactttttttatatcttat 44989725  T
Q  438 aaattaagtcagtcatattgtttt 461  Q
    ||||||||||||||||||||||||    
T  44989726 aaattaagtcagtcatattgtttt 44989749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 502 - 642
Target Start/End: Original strand, 44989747 - 44989871
Alignment:
Q  502 tttgctattcggtgagattgctctaggactttgtgtctttagggagtctcagttgggctcggctaggttttattttgatctggtatgcaactctgtctgt 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||  |||||||||||||||| ||||| |    
T  44989747 tttgctattcggtgagattgctctaggactttgtgtctttagggagtctcagtta--------------ttatt--gatctggtatgcaactatgtctct 44989830  T
Q  602 ggtctatccaagaaacctcattatatgtctgtcattctctt 642  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44989831 ggtctatccaagaaacctcattatatgtctgtcattctctt 44989871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 183
Target Start/End: Original strand, 44989495 - 44989529
Alignment:
Q  149 gaatactttcaaataattaaagggtacaaattcat 183  Q
    |||||||||||||||||||||||||||||||||||    
T  44989495 gaatactttcaaataattaaagggtacaaattcat 44989529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 54417153 - 54417046
Alignment:
Q  8 atcaaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaat 107  Q
    |||||| |||||||||||||||| |||||| | ||||||| ||  |||||  |||||| ||||||| | ||||||||   ||||||  |||||| |||||    
T  54417153 atcaaaattattatttttacttggtagttagtgctatatagatacatttc-cttttaattcactttgattaattctactgaaaatatgtttttaaagaat 54417055  T
Q  108 cttgattat 116  Q
     ||||||||    
T  54417054 tttgattat 54417046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 16570627 - 16570521
Alignment:
Q  8 atcaaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaat 107  Q
    |||||| |||||||||||||||  |||||  ||| ||||| ||  |||||||||| || ||||||| | ||||||||| ||||||| ||||||||||||     
T  16570627 atcaaaattattatttttacttattagttggtaccatatagatatatttcttttt-aattcactttgattaattctattaaaaatatatttttagagaac 16570529  T
Q  108 cttgatta 115  Q
     |||||||    
T  16570528 tttgatta 16570521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 26835723 - 26835618
Alignment:
Q  10 caaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaatct 109  Q
    |||| ||||||||||||||| ||||||| ||| ||||||||  ||||| ||||||| |  |||| | |||||||||  |||||| ||||||||||||  |    
T  26835723 caaaattattatttttacttaatagttagtacaatataaatatatttc-tttttaattttcttttattaattctattgaaaatatatttttagagaactt 26835625  T
Q  110 tgattat 116  Q
    |||||||    
T  26835624 tgattat 26835618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 13580487 - 13580397
Alignment:
Q  10 caaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacattttta 101  Q
    |||| ||||||||||||||| ||||||| || |||||||||  ||||| ||||||| || |||| | |||||||||  |||||| |||||||    
T  13580487 caaaattattatttttacttaatagttagtattatataaatatatttc-tttttaattcgctttgattaattctattgaaaatatattttta 13580397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 36071681 - 36071581
Alignment:
Q  15 ttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaatcttgatt 114  Q
    ||||||||||||||||||||||| ||||||||| ||  ||||| ||||||| |  |||| | |||||| ||  |||||| ||||||||||||  ||||||    
T  36071681 ttattatttttacttgatagttagtactatatagatatatttc-tttttaattttctttgattaattcaattgaaaatatatttttagagaactttgatt 36071583  T
Q  115 at 116  Q
    ||    
T  36071582 at 36071581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 40877054 - 40876949
Alignment:
Q  10 caaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaatct 109  Q
    |||| |||||||||||||||| |||||| || |||||||||  ||||| |||||||||   ||  | |||||||||  |||||| ||||||| |||| ||    
T  40877054 caaaattattatttttacttggtagttagtattatataaatatatttc-tttttaacttgtttggattaattctattgaaaatatatttttatagaacct 40876956  T
Q  110 tgattat 116  Q
    |||||||    
T  40876955 tgattat 40876949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 9815801 - 9815749
Alignment:
Q  10 caaatttattatttttacttgatagttaatactatataaatggatttcttttt 62  Q
    |||| |||||||||||||||  |||||||||||||||| ||  ||||||||||    
T  9815801 caaaattattatttttacttagtagttaatactatatagatatatttcttttt 9815749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 12174320 - 12174415
Alignment:
Q  10 caaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaa 106  Q
    |||| |||||||||||||||  |||||| ||||||||| ||  ||||| ||||||| ||  ||| | ||||| ||| ||||||| ||||||||||||    
T  12174320 caaaattattatttttacttagtagttagtactatatagatatatttc-tttttaattcgttttgattaattatattaaaaatatatttttagagaa 12174415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 8246849 - 8246797
Alignment:
Q  10 caaatttattatttttacttgatagttaatactatataaatggatttcttttt 62  Q
    |||| ||||||||||||||| ||||||| ||||||||| ||  ||||||||||    
T  8246849 caaaattattatttttacttaatagttagtactatatagatatatttcttttt 8246797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University