View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_high_7 (Length: 429)
Name: NF6792_high_7
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 5 - 421
Target Start/End: Complemental strand, 51855192 - 51854771
Alignment:
| Q |
5 |
agaaggccatggaaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaaggcttgattctaatggtgg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51855192 |
agaaggccatggaaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaagacttgattctaatggtgg |
51855093 |
T |
|
| Q |
105 |
aaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacact |
204 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51855092 |
aaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggttgaaaaaatgaaaaactaatggtcatggcacatgctacttcaatagacact |
51854993 |
T |
|
| Q |
205 |
ac--tacactagcttttgttgctgtt---aatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaa |
299 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51854992 |
accctacactagcttttgttgctgttgttaatcaaattggtggtgatggccaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaa |
51854893 |
T |
|
| Q |
300 |
gagctaaatgcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51854892 |
gagctaaatgcctaattcagtttcatagttggataagctcaagtactatttctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaa |
51854793 |
T |
|
| Q |
400 |
agaaattgaatatgggtgatat |
421 |
Q |
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|||||||||||||||||||||| |
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| T |
51854792 |
agaaattgaatatgggtgatat |
51854771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 35043289 - 35043384
Alignment:
| Q |
5 |
agaaggccatggaaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaaggcttgattctaatg |
100 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |
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| T |
35043289 |
agaaggccatggaaaagaaatgtcaaactcattttcatcttgcacactatactgatgctctatttaggagccatgaagaaagacttaattctaatg |
35043384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 5 - 421
Target Start/End: Original strand, 26887232 - 26887653
Alignment:
| Q |
5 |
agaaggccatggaaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaaggcttgattctaatggtgg |
104 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26887232 |
agaaggccatggaaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaagacttgattctaatggtgg |
26887331 |
T |
|
| Q |
105 |
aaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacact |
204 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
26887332 |
aaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcgcatgctacttcaatagacact |
26887431 |
T |
|
| Q |
205 |
--actacactagcttttgttgc---tgttaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaa |
299 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
26887432 |
acactacactagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttaaaaaaccttcaa |
26887531 |
T |
|
| Q |
300 |
gagctaaatgcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaa |
399 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887532 |
gaactaaatgcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaa |
26887631 |
T |
|
| Q |
400 |
agaaattgaatatgggtgatat |
421 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
26887632 |
agaaattgaatatgggtgatat |
26887653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 5 - 421
Target Start/End: Complemental strand, 8944427 - 8944006
Alignment:
| Q |
5 |
agaaggccatggaaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaaggcttgattctaatggtgg |
104 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8944427 |
agaaggccatggaaaagaaatgtaatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaatacttgattctaatggtgg |
8944328 |
T |
|
| Q |
105 |
aaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacact |
204 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
8944327 |
aaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacact |
8944228 |
T |
|
| Q |
205 |
ac--tacactagcttttgttgctgtt---aatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaa |
299 |
Q |
| |
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|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944227 |
acactacactagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaa |
8944128 |
T |
|
| Q |
300 |
gagctaaatgcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8944127 |
gagctaaatgcctaattcagtttcatagttggataatctcaagtactattgctagatcaatatgaaggagcaatactctgcaacatttagtcaaagcgaa |
8944028 |
T |
|
| Q |
400 |
agaaattgaatatgggtgatat |
421 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
8944027 |
agaaattgaatatgggtgatat |
8944006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 98 - 337
Target Start/End: Complemental strand, 21989075 - 21988833
Alignment:
| Q |
98 |
atggtggaaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaat |
197 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| ||||| | |||||||| ||||| ||| || ||||||||||| |
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| T |
21989075 |
atggtggaaggatcaaagagtcaaatgtagctaagtttatatcagcactagctggtggaaactaagaaaaactgatggttatggcatatgctacttcagc |
21988976 |
T |
|
| Q |
198 |
agacactactacactagcttttgttgctgtt---aatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatc |
294 |
Q |
| |
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|||||||| |||||| |||| ||||||||| ||||||| ||||||||||||||||| |||||| | |||||||||||| |||||||||||||||| | |
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| T |
21988975 |
ggacactacgacactaactttagttgctgttgttaatcaaactggtggtgatggctaagccatttgcctaattcaattttaatttcatagttagaaaacc |
21988876 |
T |
|
| Q |
295 |
ttcaagagctaaatgcctaattcagtttcatagttggataagc |
337 |
Q |
| |
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|| |||||||||||||||||||| ||| ||||||||| |||| |
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|
| T |
21988875 |
atcgagagctaaatgcctaattcaattttatagttggaaaagc |
21988833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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