View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_high_8 (Length: 423)
Name: NF6792_high_8
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 49824422 - 49824016
Alignment:
| Q |
1 |
gtaagggagtgggaaggaataaggattgtgaagacataacacctagccgtaagggagtggaaaatactaaggacaatgacaagacaccaagcagtgaggt |
100 |
Q |
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| T |
49824422 |
gtaagggagtgggaaggaataaggattgtgaagacataacacctagccgtaagggagtggaaaatactaaggacaatgacaagacaccaagcagtgaggt |
49824323 |
T |
|
| Q |
101 |
aattggcaagcggatggacaatgaaaaaacaccaaagagcaagggagttggcaagaggacaactgatagtgtgggctctgattttgacaaacctgaagtc |
200 |
Q |
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| T |
49824322 |
aattggcaagcggatggacaatgaaaaaacaccgaagagcaagggagttggcaagaggacaactgatagtgtgggctctgattttgacaaacctgaagtc |
49824223 |
T |
|
| Q |
201 |
ggcgaagggtcaattaagaaacctatgccagtgtctaagcgcattaagacttcgaaagtttaaaaatcccatgtcagttgactatgcctttgtttgtctg |
300 |
Q |
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| T |
49824222 |
ggcgaagggtcaattaacaaacctatgccagtgtctaagcgcattaagacttcgaaagtttaaaaatcccatgtcagttgactatgcctttgtttgtctg |
49824123 |
T |
|
| Q |
301 |
ccttgcatctaattgagtattgttgattcagacatagtttaagaagtagtgtcaacttgtgctttttgtgtatcgtggattgaagctcctccttttattt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49824122 |
ccttgcatctaattgagtattgttgattcagacatagttt---aagtagtgtcaacttgtgctttttgtgtatcgtggattgaagctcctccttttattt |
49824026 |
T |
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| Q |
401 |
tcgatgatgt |
410 |
Q |
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| T |
49824025 |
tcgatgatgt |
49824016 |
T |
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