View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_low_10 (Length: 444)
Name: NF6792_low_10
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 435
Target Start/End: Complemental strand, 41038157 - 41037732
Alignment:
| Q |
10 |
atggacatcatgtggtataccagttattgaagcagcagatagaccaaacctaaccgtgttggggagcacagttttcaaatcaactatgtcagcaatggta |
109 |
Q |
| |
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||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41038157 |
atggatatcatgtgctataccagttactgaagcagcagatagaccaaacctaaccgtgttggggagcacagttttcaaatcaactatgtcagcaatggta |
41038058 |
T |
|
| Q |
110 |
acaattttgccattggcatgtatgacaacaacactcaatgtgttagagggagagtcataggctatacttacttgattcaatgattcactcacccattccc |
209 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41038057 |
acaattttgccattggcatgtatgacaacaacactcaatgtgttagagggagagtcataggctatacttacttgattcaatgattcactcacccattccc |
41037958 |
T |
|
| Q |
210 |
aatcccattccacgatcttggtcgaaattatagagttgacatcgattccaatatggtaaatatagggatcaaaactattgggataaaggtcaaactctac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037957 |
aatcccattccacgatcttggtcgaaattatagagttgacatcgattccaatatggtaaatatagggatcaaaactattgggataaaggtcaaactctac |
41037858 |
T |
|
| Q |
310 |
accaacaaattgattgtaagcattctttgaatcaactaatccaaaatattgattttctgagttgggtggaatcacactgtcttgtggtgcaataaagaag |
409 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
41037857 |
accaacaaattgattgtaagcattctttgaatcaactactccaaaatattgactttctgaattgggtggaatcacagtgtcttgtggtgcaataaagaag |
41037758 |
T |
|
| Q |
410 |
atcaatccatcagttagttgatgtcc |
435 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
41037757 |
atcaatccatcagttagttgatgtcc |
41037732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 28 - 424
Target Start/End: Complemental strand, 41066323 - 41065933
Alignment:
| Q |
28 |
accagttattgaagcagcagatagaccaaacctaaccgtgttggggagcacagttttcaaatcaactatgtcagcaatggtaacaattttgccattggca |
127 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| || | |||||||||| || ||| ||||||||| |
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| T |
41066323 |
accagttattgaagcaccagatagaccaaacctaaccttgttggggagcacagctttcaaatcaacgatttgagcaatggtagaaaattttccattggca |
41066224 |
T |
|
| Q |
128 |
tgtatgacaacaacactcaatgtgttagagggagagtcataggctatacttacttgattcaatgattcactcacccattcccaatcccattccacgatct |
227 |
Q |
| |
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| ||||||||||||||||||||||||||| ||||||||| ||| ||||||||| | |||||||| ||||| | ||||||| || |||| ||| |
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| T |
41066223 |
taagtgacaacaacactcaatgtgttagaggaagagtcatatgctttacttactttagtcaatgatccactcgcgaattccca------tttcacggtct |
41066130 |
T |
|
| Q |
228 |
tggtcgaaattatagagttgacatcgattccaatatggtaaatatagggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgta |
327 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41066129 |
tgagagaaattaaagagttgacatcgattccaatatgtttcgtattgggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgta |
41066030 |
T |
|
| Q |
328 |
agcattctttgaatcaactaatccaaaatattgattttctgagttgggtggaatcacactgtcttgtggtgcaataaagaagatcaatccatcagtt |
424 |
Q |
| |
|
|| ||| ||||||||||||| ||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
41066029 |
agtattttttgaatcaactactccaagatattgactttctgagttgggtggaatcttagtgtcttgtggtgcaataaagaagaccaaaccatcagtt |
41065933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 30 - 424
Target Start/End: Complemental strand, 41044173 - 41043785
Alignment:
| Q |
30 |
cagttattgaagcagcagatagaccaaacctaaccgtgttggggagcacagttttcaaatcaactatgtcagcaatggtaacaattttgccattggcatg |
129 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||||| ||||||||||||||| ||||||||||||| ||| | ||||| |||| ||||||||| |||| ||| |
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| T |
41044173 |
cagttattgaagcaccagctagaccaagcctaatcgtgttggggagcacggttttcaaatcaattatttgagcaagggtagcaattttgcgattgtcata |
41044074 |
T |
|
| Q |
130 |
tatgacaacaacactcaatgtgttagagggagagtcataggctatacttacttgattcaatgattcactcacccattcccaatcccattccacgatcttg |
229 |
Q |
| |
|
|||||| |||||||||||| ||||||||| |||||||||||| |||||||||| |||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
41044073 |
agtgacaagaacactcaatgtcttagagggaaagtcataggctacacttacttgagtcaatgatccactcacccatt------cccattccacgatcttg |
41043980 |
T |
|
| Q |
230 |
gtcgaaattatagagttgacatcgattccaatatggtaaatatagggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgtaag |
329 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| | |||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
41043979 |
ctcgaaattaaagagttgatatcgattccaatatgtttcatattgggatcaagaatattggtataaaggtcaaactctacaccaacaaattgattgtaag |
41043880 |
T |
|
| Q |
330 |
cattctttgaatcaactaatccaaaatattgattttctgagttgggtggaatcacactgtcttgtggtgcaataaagaagatcaatccatcagtt |
424 |
Q |
| |
|
|||| | | |||||||| ||||||| | | || ||||| ||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
41043879 |
cattttctatatcaactactccaaaacgtgcacttgttgagtggggtggaatcacagtgtcttgtggtgcaataaaaaagatcactccatcagtt |
41043785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 41074145 - 41074111
Alignment:
| Q |
299 |
tcaaactctacaccaacaaattgattgtaagcatt |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
41074145 |
tcaaactctacaccaacaaattgattgtaagcatt |
41074111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 41047304 - 41047360
Alignment:
| Q |
285 |
tattgggataaaggtcaaactctacaccaacaaattgattgtaagcattctttgaat |
341 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
41047304 |
tattggcataagtgtcaaactctacaccaacaaatttattaaaagcattatttgaat |
41047360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 28 - 420
Target Start/End: Original strand, 8495812 - 8496198
Alignment:
| Q |
28 |
accagttattgaagcagcagatagaccaaacctaaccgtgttggggagcacagttttcaaatcaactatgtcagcaatggtaacaattttgccattggca |
127 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||| || ||| ||||||||| |
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|
| T |
8495812 |
accagttattgaagcaccagatagaccaaacctaaccttgttggggagcactgttttcaaatcaactatttgagcaatggtggaaaattttccattggca |
8495911 |
T |
|
| Q |
128 |
tgtatgacaacaacactcaatgtgttagagggagagtcataggctatacttacttgattcaatgattcactcacccattcccaatcccattccacgatct |
227 |
Q |
| |
|
| |||||||||||||||||||||| |||| ||||||||| ||||| ||||||| | |||||||| ||||| | ||| ||||| | ||| ||| |
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|
| T |
8495912 |
taagtgacaacaacactcaatgtgtttgaggaagagtcataagctatgcttactttagtcaatgatccactcgcaaattgccaattc------acggtct |
8496005 |
T |
|
| Q |
228 |
tggtcgaaattatagagttgacatcgattccaatatggtaaatatagggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgta |
327 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8496006 |
tgagagaaattaaagagttgacatcgattccaatatgtctcgtattgggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgta |
8496105 |
T |
|
| Q |
328 |
agcattctttgaatcaactaatccaaaatattgattttctgagttgggtggaatcacactgtcttgtggtgcaataaagaagatcaatccatc |
420 |
Q |
| |
|
|| | | ||||||||||||| ||||| || | || ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
8496106 |
agaactttttgaatcaactactccaagatgtagactttctgagttgggtggaatcacagtgtcttgtggtgcaataaagaagaccaatccatc |
8496198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 8488300 - 8488368
Alignment:
| Q |
28 |
accagttattgaagcagcagatagaccaaacctaaccgtgttggggagcacagttttcaaatcaactat |
96 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
8488300 |
accagttattgaagcaccagatagaccaaacctaaccttgttagggagcactgttttcaaatcaactat |
8488368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 21489406 - 21489359
Alignment:
| Q |
135 |
caacaacactcaatgtgttagagggagagtcataggctatacttactt |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21489406 |
caacaacactcaatgtgttagagggagagtcatagattatacttactt |
21489359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 333
Target Start/End: Complemental strand, 21482904 - 21482869
Alignment:
| Q |
298 |
gtcaaactctacaccaacaaattgattgtaagcatt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21482904 |
gtcaaactctacaccaacaaattgattgaaagcatt |
21482869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 333
Target Start/End: Complemental strand, 21493056 - 21493021
Alignment:
| Q |
298 |
gtcaaactctacaccaacaaattgattgtaagcatt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21493056 |
gtcaaactctacaccaacaaattgattgaaagcatt |
21493021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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