View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_low_14 (Length: 408)
Name: NF6792_low_14
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 35072008 - 35071611
Alignment:
| Q |
17 |
tcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttccagctaactgtaaattggatcaggttaaggcttctattgaagatggtgtt |
116 |
Q |
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| T |
35072008 |
tcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttccagctaactgtaaattggatcaggttaaggcttctattgaagatggtgtt |
35071909 |
T |
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| Q |
117 |
cttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgagagtaattatgaaaagtt------------- |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
35071908 |
cttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgagagtaataatgaacagttctgttcgtgtgga |
35071809 |
T |
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| Q |
204 |
--gaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgttacaaataagaaacgtgtgtgtatcataa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071808 |
ttgaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgttacaaataagaaacgtgtgtgtatcataa |
35071709 |
T |
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| Q |
302 |
gcattaatacgggttagataaagcacctacgtgttgatgtccaccacacatgtgattctacggaattatgttatttttcaattattattgatgtccat |
399 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35071708 |
gcattaatacgagttagataaagcacctacgtgttgatgtccaccacacatgtgattctacggaattatgttatttttcaattattattaatgtccat |
35071611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 34919170 - 34919235
Alignment:
| Q |
77 |
taaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaaga |
142 |
Q |
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|||| ||||||||||||| ||| ||| || |||| ||||||||||||||||| ||||||||||| |
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| T |
34919170 |
taaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga |
34919235 |
T |
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