View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_low_18 (Length: 375)
Name: NF6792_low_18
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 361
Target Start/End: Original strand, 13260769 - 13261118
Alignment:
| Q |
12 |
acatcaagattactcgtctctacttcattaggatcagtaggcagaactagaactggtgccccatcagaatcttcaaaactagatgaatgaacctcatcta |
111 |
Q |
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| T |
13260769 |
acatcgagattactcgtctctacttcattaggatcaataggcagaacttgaactggtgccccatcagaatcttcaaaactagatgaatgaacctcatcta |
13260868 |
T |
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| Q |
112 |
gagtgtcttgaacagccacattagtgttctcgtcggtattttccacacatgtcgatgcatcaaggcacattgcaccaggttcgtccatagcaccattatt |
211 |
Q |
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| T |
13260869 |
gagtgtcttgaacagccacattagtgttctcgtcggtattttccacacatgtcgatgcatcaaggcacattgcagcaggttcgtccatagcaccattgtt |
13260968 |
T |
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| Q |
212 |
atcatccaaattttgaacttgttcaaccgaatggccactggattccttggaagaaacatctaaaatgttcacactatacaaggatttatcactcactatc |
311 |
Q |
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| T |
13260969 |
atcatccaaattttgaacttgttcaaccgaacggccactggattccttggaagaaacatctaaagaattcacactatacaaggatttatcactcactatc |
13261068 |
T |
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| Q |
312 |
tcagcttctccctcaaccatattttcatcttcgcttggtgttgcatgatg |
361 |
Q |
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| T |
13261069 |
tcagcttctccctcaaccatattttcatcttcacttggtgttgcatgatg |
13261118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 13269819 - 13270043
Alignment:
| Q |
18 |
agattactcgtctctacttcattag---gatcagtaggcagaactagaactggtgccccatcagaatcttcaaaactagatgaatgaacctcatctagag |
114 |
Q |
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| T |
13269819 |
agatcactagtctctacttcattggttggatcagtaggcagaacttgaagtgctgtcccatctgaatcatcaaaactacacgaacaaacctcatctagat |
13269918 |
T |
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| Q |
115 |
tgtcttgaacagccacattagtgttctcgtcggtattttccacacatgtcgatgcatcaaggcacattgcaccaggttcgtccatagcaccattattatc |
214 |
Q |
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| T |
13269919 |
tatcttcaacaggcacatcggtgttctcatcagtatttttcgcacatgtggacacatcaaagcacattgcagcagcttcaacttgaacacaattattata |
13270018 |
T |
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| Q |
215 |
atccaaattttgaacttgttcaacc |
239 |
Q |
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| T |
13270019 |
atccaaattgggaacgtgttcaacc |
13270043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 13269382 - 13269471
Alignment:
| Q |
64 |
ctggtgccccatcagaatcttcaaaactagatgaatgaacctcatctagagtgtcttgaacagccacattagtgttctcgtcggtatttt |
153 |
Q |
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| T |
13269382 |
ctggtgtcccatctgaatcttcaaagttagataaaagaacctcatgtagaatatcttcaaaagccacatctgtgttctcatcagtatttt |
13269471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 13259827 - 13259891
Alignment:
| Q |
206 |
attattatcatccaaattttgaacttgttcaaccgaatggccactggattccttggaagaaacat |
270 |
Q |
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| T |
13259827 |
attattatcatccaatttgtgaagttgttcaaccaaacagccacttgattcctttggagaaacat |
13259891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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