View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_low_19 (Length: 359)
Name: NF6792_low_19
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 151 - 358
Target Start/End: Original strand, 11530461 - 11530668
Alignment:
| Q |
151 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
250 |
Q |
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| T |
11530461 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
11530560 |
T |
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| Q |
251 |
acattccaacaccttgtatgaggatttaatcgagacagcaataaaacacgataaactcctacaacaccaaaccgaaacacaacccttagttggggaccaa |
350 |
Q |
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| T |
11530561 |
actttccaacaccttgtatgaggatttaatcgagacagcaataaaacacgacaaactcctacaacaccaaaccgaaacacaacccttagttggggaccaa |
11530660 |
T |
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| Q |
351 |
acaccaaa |
358 |
Q |
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|||||||| |
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| T |
11530661 |
acaccaaa |
11530668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 151 - 358
Target Start/End: Original strand, 11555958 - 11556165
Alignment:
| Q |
151 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
250 |
Q |
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| T |
11555958 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
11556057 |
T |
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| Q |
251 |
acattccaacaccttgtatgaggatttaatcgagacagcaataaaacacgataaactcctacaacaccaaaccgaaacacaacccttagttggggaccaa |
350 |
Q |
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| T |
11556058 |
actttccaacaccttgtatgacgatttaatcgagacagcaataaaacacgacaaactcctacaacaccaaaccgaaacacaacccttagttggggatcaa |
11556157 |
T |
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| Q |
351 |
acaccaaa |
358 |
Q |
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| T |
11556158 |
acaccaaa |
11556165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11555825 - 11555891
Alignment:
| Q |
1 |
tcgaaaggatgcttgggaaatgaaaaggttagtaagttatgatagtaccataatttacagtcacttg |
67 |
Q |
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| T |
11555825 |
tcgaaaggatgcttgggaaatgaaaaggttagtaagttatgatagtactataatttacagtcacttg |
11555891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11530179 - 11530213
Alignment:
| Q |
1 |
tcgaaaggatgcttgggaaatgaaaaggttagtaa |
35 |
Q |
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| T |
11530179 |
tcgaaaggatgcttgggaaatgaaaaggttagtaa |
11530213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 11556521 - 11556559
Alignment:
| Q |
247 |
acaaacattccaacaccttgtatgaggatttaatcgaga |
285 |
Q |
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| T |
11556521 |
acaaaccttccaacaccttgtatgacgatttaatcgaga |
11556559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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