View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_low_2 (Length: 877)
Name: NF6792_low_2
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_2 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 245 - 856
Target Start/End: Complemental strand, 1718426 - 1717815
Alignment:
| Q |
245 |
acaccataccttacataaagtttgatatccattcaaagtttggtctgttctgagatccttactatattttaattgtattgtattgtctcatttgtgctgt |
344 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1718426 |
acaccataccttacatgaagtttgatatccattcaaagtttggtctgttctgagatccttactatattttaattgtattgtattgtctcatttgtgctgt |
1718327 |
T |
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| Q |
345 |
ctaaacactagcagttccaagcattgatgcagattaagtcactttggacaataaactcctcatatagatgcttgtacccctggttatatatatagatatc |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1718326 |
ctaaacactagcagttccaagcattgatgcagattaagtcattttggacaataaactcctcatatagatgcttgtacccctggttatatatatagatatc |
1718227 |
T |
|
| Q |
445 |
tcagtcacattgttgagatttgtgttttattcttgtttgttctttgctaagatagatcaaatgttatatgcacttttgcagaaaagctatatagatgagt |
544 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1718226 |
tcagtcacattgttgagatttgtgttttattctcgtttgttctttgctaagatagatcaaatgttatatgcacttttgcagaaaagctatatagatgagt |
1718127 |
T |
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| Q |
545 |
atatgactgcattacttgaacattgtaattttattgagggtgatttttgcaaccatgattcggttcaaaaagaagtttctaaagttatttgggaatctcc |
644 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1718126 |
atatgactgcattacttgaacattgtaattttattgagggtgatttttgcaaccatgattcggttcaaaaagaagtttctaaagttatttgggaatctcc |
1718027 |
T |
|
| Q |
645 |
aagttgaaaaaaccatttttaatcctaaagaaaccaatccaaccattctttgcaattccataagtcatgttatatacgtatcttccaactgcaattcaaa |
744 |
Q |
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| T |
1718026 |
aagttaaaaaaaccatttttaatcctaaagaaaccaatccaaccattctttgcaattccataagtcatgttatatacgtatcttccaactgcaattcaaa |
1717927 |
T |
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| Q |
745 |
gaatatcagcaaatgaatacgtgagcatgagaggctaaaatagaacctcattcaatcaaatcagtgataaaggtcttggaaggtagaaaaataagaaatg |
844 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1717926 |
gaatatcagcaaatgaatacgtgagcatgagaggctaaaatagaacctcattcaatcaaatcagtgataaaggtcttggaaggtagaaaaataagaaatg |
1717827 |
T |
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| Q |
845 |
aatactgtcact |
856 |
Q |
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|||||||||||| |
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| T |
1717826 |
aatactgtcact |
1717815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 1718643 - 1718440
Alignment:
| Q |
17 |
acatcagaacaaaacaaaggcctaaattgacatatggcgacttgctcaatgcaatatactctgcaactgatcgagctaaagcaggaaagcttgaaatgaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1718643 |
acatcagaacaaaacaaaggcctaaattgacatatggcgacttgctcaatgcaatttactctgcaaccgatcgagctaaagcaggaaagcttgaaatgaa |
1718544 |
T |
|
| Q |
117 |
aagccaaaagctttctagggacacttcggagcaccatcggactatatattacatcagttatacaaagttcttct-aatataattttattaacacagacac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1718543 |
aagccaaaagctttctagggacacttcggagcaccatcggactatatattacatcagttatacaaagttcttctaaatataattttattaacacagacac |
1718444 |
T |
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| Q |
216 |
tgtt |
219 |
Q |
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|||| |
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| T |
1718443 |
tgtt |
1718440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 622 - 673
Target Start/End: Original strand, 21263206 - 21263257
Alignment:
| Q |
622 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
673 |
Q |
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|||| |||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
21263206 |
tctagagttatttgggaatatccaagttgaaaaagccatttttaatcctaaa |
21263257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 673
Target Start/End: Original strand, 11852 - 11903
Alignment:
| Q |
622 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
673 |
Q |
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|||| ||||||||| |||| ||||||||||||| ||||||||||||||||| |
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| T |
11852 |
tctagagttatttgagaatatccaagttgaaaaggccatttttaatcctaaa |
11903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 673
Target Start/End: Complemental strand, 42934919 - 42934868
Alignment:
| Q |
622 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
673 |
Q |
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|||| ||||||||| |||| ||||||||||||| ||||||||||||||||| |
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| T |
42934919 |
tctagagttatttgagaatatccaagttgaaaaggccatttttaatcctaaa |
42934868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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