View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_low_20 (Length: 359)
Name: NF6792_low_20
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_20 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 30200254 - 30199921
Alignment:
| Q |
15 |
catcaccgttttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaactt |
114 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30200254 |
catcaccgttttgcagtcatgcaccaaggttgcccttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaactt |
30200155 |
T |
|
| Q |
115 |
ccagtaaatcacaagtctgcagaggacaaattggaggtattattccatgctacttttgttgatttgattatgctgtttatacacttatccaatattgaga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30200154 |
ccagtaaatcacaagtctgcagaggacaaattggaggtattattccatgctacttttgttgatttgattatgctgtttatacacttatccaatattgaga |
30200055 |
T |
|
| Q |
215 |
tattgcatctctgttttgttattagcttctttcaactagatttcattatagccctatagctattttagaatctgggcttggcctactggaacaatttgga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30200054 |
tattgcatctctgttttgttattagcttctttcaactagatttcattatagcccaatagctattttagaatctgggcttggcctactggaacaatttgga |
30199955 |
T |
|
| Q |
315 |
ctgttgttagctttcagttgcacctagtgatgtc |
348 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
30199954 |
ctgttgttagctttcagttacacctagtgatgtc |
30199921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 51506802 - 51507080
Alignment:
| Q |
15 |
catcaccgttttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaactt |
114 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
51506802 |
catcaccattttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggtgagtgctttcgtttgacagaggaattccgtaaactt |
51506901 |
T |
|
| Q |
115 |
ccagtaaatcacaagtctgcagaggacaaattggaggtattattccatgctacttttgttgatttgattatgctgtttatacacttatccaatattgaga |
214 |
Q |
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|| |||||||||| ||| ||||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||| |
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| T |
51506902 |
ccggtaaatcacaggtccacagaggacaaattggaggtatgt---catgccacttttgttgaattgattcagctgtttatacacttgtccaatattgaga |
51506998 |
T |
|
| Q |
215 |
tattgcatct-ctgttttgttattagcttctttcaactagattt-cattatagccctatagctattttagaatctgggcttg |
294 |
Q |
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|||||||| | || ||| || |||||||||||||||||| ||| ||||||||| ||||| ||||||||| |||||||| |
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| T |
51506999 |
tattgcatgtcctatttcgtcgttagcttctttcaactaggtttatattatagcctaatagcagttttagaatttgggcttg |
51507080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 51463334 - 51463436
Alignment:
| Q |
25 |
ttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaatc |
124 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||| ||||| |||||| |
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| T |
51463334 |
ttgcagtcatgcatcaaggttgcacttgattttgtctctcctgaacatattggtgagtgcttccgtttgacagaggaattccgcaagcttccgataaatc |
51463433 |
T |
|
| Q |
125 |
aca |
127 |
Q |
| |
|
||| |
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| T |
51463434 |
aca |
51463436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 51486057 - 51486150
Alignment:
| Q |
23 |
ttttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttcc |
116 |
Q |
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||||| ||||||||| |||||| | ||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |
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| T |
51486057 |
ttttgtagtcatgcatcaaggtcggacttgattttgtctcacctgaaaatgttggcgagtgcttccgtttgactgaggaattccgtaagcttcc |
51486150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 27401308 - 27401439
Alignment:
| Q |
23 |
ttttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaa |
122 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27401308 |
tttttcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggtgagtgcttccgtttgacagaggaattccgcaaacttccagtaaa |
27401407 |
T |
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| Q |
123 |
tcacaagtctgcagaggacaaattggaggtat |
154 |
Q |
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||||| ||| |||||||||||||||||||| |
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| T |
27401408 |
tcacaggtccatagaggacaaattggaggtat |
27401439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 20865794 - 20865655
Alignment:
| Q |
15 |
catcaccgttttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaactt |
114 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||| |||| |||||| |
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| T |
20865794 |
catcactgttttgcagtcgtgcaccaaggttgcacttgattttgtctctcctgaaaatgtcggtgaatgcttccgtttgacagaggaaatccgtaaactt |
20865695 |
T |
|
| Q |
115 |
ccagtaaatcacaagtctgcagaggacaaattggaggtat |
154 |
Q |
| |
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|||||||||||| | | |||||||||||||| |||||| |
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| T |
20865694 |
ccagtaaatcactatttcacagaggacaaattgcaggtat |
20865655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 134536 - 134435
Alignment:
| Q |
25 |
ttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaatc |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||||| |
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| T |
134536 |
ttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgctggcgagtgcttgcgtttgacagaggaaatccgtaaacttccagtaaatc |
134437 |
T |
|
| Q |
125 |
ac |
126 |
Q |
| |
|
|| |
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|
| T |
134436 |
ac |
134435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 5178823 - 5178949
Alignment:
| Q |
28 |
cagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaatcaca |
127 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||| |||||| |||||||||||| |
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| T |
5178823 |
cagtcatgcgccaaggttgcacttgattttgtctctcctgaaaacgttggtgagtgcttccatttgacagaggaattccggaaacttacagtaaatcaca |
5178922 |
T |
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| Q |
128 |
agtctgcagaggacaaattggaggtat |
154 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
5178923 |
ggtccatagaggacaaattggaggtat |
5178949 |
T |
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