View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_low_21 (Length: 354)
Name: NF6792_low_21
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 3 - 353
Target Start/End: Original strand, 11557580 - 11557930
Alignment:
| Q |
3 |
tgaagaagagcacaggagggactaaagagaggatgacacgtgaggagaagctagagaaaaagtgacggacgtgacggagagaggaacggtgtgtgaccca |
102 |
Q |
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| T |
11557580 |
tgaagaagagaacaggagggactaaagagaggatgacacgtgaggagaagctagagaaaaagtgacgcacgtgacggagagaggaacggtgtgtgaccca |
11557679 |
T |
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| Q |
103 |
gtttgtgtggttgtagagtgttctgnnnnnnngcattcctcgttcttggttttggtctgcccagtctgggattgtacggaggagggtgattatggttttt |
202 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11557680 |
gtttgtgtggttgtagagtgttctgtttttttgcattcctcgttcttggttttggtctgcccagtctgggattgtacggaggagggtgattatggttttt |
11557779 |
T |
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| Q |
203 |
attggagtggggggaggtgtggaagaacattttaggggggtgtgtttgtaggatttggaatatggttgaagaattagttgttggagtaggtgtgagtggc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11557780 |
attggagtggggggaggtgtggaagaacattttaggggggtgtgtttgtaggatttggaatatggttgaagaattagttgttggagtaggtgtgagtggc |
11557879 |
T |
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| Q |
303 |
attttggagtgaattgggaagttaggtttgtgagtttgatttggttattgg |
353 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11557880 |
attttggggtgaattgggaagttaggtttgtgagtttgatttggttattgg |
11557930 |
T |
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