View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6792_low_26 (Length: 310)

Name: NF6792_low_26
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6792_low_26
NF6792_low_26
[»] chr7 (5 HSPs)
chr7 (152-210)||(12543375-12543433)
chr7 (20-81)||(7744639-7744700)
chr7 (28-81)||(12543251-12543304)
chr7 (152-214)||(7744506-7744568)
chr7 (277-310)||(12543514-12543547)
[»] chr8 (2 HSPs)
chr8 (152-206)||(1080879-1080933)
chr8 (152-210)||(24917449-24917507)
[»] chr5 (2 HSPs)
chr5 (157-210)||(11893735-11893788)
chr5 (157-210)||(28086278-28086331)
[»] chr3 (2 HSPs)
chr3 (152-206)||(53281561-53281616)
chr3 (20-81)||(53281429-53281490)
[»] chr2 (1 HSPs)
chr2 (157-210)||(562179-562232)
[»] chr6 (3 HSPs)
chr6 (152-198)||(15339447-15339493)
chr6 (157-210)||(33846143-33846196)
chr6 (157-210)||(33847182-33847235)


Alignment Details
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 12543375 - 12543433
Alignment:
Q  152 ctgtttgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543375 ctgtttgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 12543433  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 7744700 - 7744639
Alignment:
Q  20 catcaaagagaggggtggggcgaagggcaagaatgtagcggcagccagtggtggtggcgggt 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  7744700 catcaaagagaggggtggggcgaagggcaagaatgcagcggcagccagtggtggtgacgggt 7744639  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 12543251 - 12543304
Alignment:
Q  28 agaggggtggggcgaagggcaagaatgtagcggcagccagtggtggtggcgggt 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543251 agaggggtggggcgaagggcaagaatgtagcggcagccagtggtggtggcgggt 12543304  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 7744568 - 7744506
Alignment:
Q  152 ctgtttgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatggatc 214  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  7744568 ctgtgtgaaatttccaaaatacccatgccacataaggggtgtatattggggtgtacatagatc 7744506  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 12543514 - 12543547
Alignment:
Q  277 agcgcctctatccaccagtagttatatattcatc 310  Q
    |||||||||||||||| |||||||||||||||||    
T  12543514 agcgcctctatccaccggtagttatatattcatc 12543547  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 1080933 - 1080879
Alignment:
Q  152 ctgtttgaaatttccaaaatacccatgccacataagggttgtatatgggggtgta 206  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1080933 ctgtgtgaaatttccaaaatacccatgccacataaggggtgtatatgggggtgta 1080879  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 24917507 - 24917449
Alignment:
Q  152 ctgtttgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 210  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  24917507 ctgtgtgaaatttccaaaatacccatgccacataaggggtgtatatggggatgtacatg 24917449  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 11893788 - 11893735
Alignment:
Q  157 tgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 210  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  11893788 tgaaatttccaaaatacccatgccacataaggggtgtatatgagggtgtacatg 11893735  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 28086278 - 28086331
Alignment:
Q  157 tgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 210  Q
    ||||||||| ||||||||||||||||||||||| ||||||||  ||||||||||    
T  28086278 tgaaatttctaaaatacccatgccacataaggggtgtatatgaaggtgtacatg 28086331  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 53281561 - 53281616
Alignment:
Q  152 ctgtttgaaatttccaaaatacccatgccacataa-gggttgtatatgggggtgta 206  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  53281561 ctgtgtgaaatttccaaaatacccatgccacataagggggtgtatatgggggtgta 53281616  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 53281429 - 53281490
Alignment:
Q  20 catcaaagagaggggtggggcgaagggcaagaatgtagcggcagccagtggtggtggcgggt 81  Q
    |||||||| ||| |||||||||||||||||| |||  ||||  ||| |||||||||||||||    
T  53281429 catcaaagggagaggtggggcgaagggcaaggatgcggcggtggccggtggtggtggcgggt 53281490  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 562232 - 562179
Alignment:
Q  157 tgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 210  Q
    ||||||||| ||||||||||||||||||||||| ||||||||  ||||||||||    
T  562232 tgaaatttctaaaatacccatgccacataaggggtgtatatgaaggtgtacatg 562179  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 15339493 - 15339447
Alignment:
Q  152 ctgtttgaaatttccaaaatacccatgccacataagggttgtatatg 198  Q
    |||| |||||||||||||||||||||||||||||| || ||||||||    
T  15339493 ctgtgtgaaatttccaaaatacccatgccacataacgggtgtatatg 15339447  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 33846196 - 33846143
Alignment:
Q  157 tgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 210  Q
    ||||||||| ||||||||||||||||||||| | ||||||||  ||||||||||    
T  33846196 tgaaatttctaaaatacccatgccacataagaggtgtatatgaaggtgtacatg 33846143  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 33847182 - 33847235
Alignment:
Q  157 tgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 210  Q
    ||||||||| ||||||||||||||||||||| | ||||||||  ||||||||||    
T  33847182 tgaaatttctaaaatacccatgccacataagaggtgtatatgaaggtgtacatg 33847235  T

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