View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_low_27 (Length: 287)
Name: NF6792_low_27
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 10131816 - 10131542
Alignment:
| Q |
13 |
catcactgcaatcagttacagtctttgaatcttggatggtgcgaacaagtcagcgatgttggagtgatgagtttagcatatggatgtcctgatcttagaa |
112 |
Q |
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| T |
10131816 |
catcactgcaatcagttacagtctttgaatcttggatggtgcgaacaagtcagcgatgttggagtgatgagtttagcatatggatgtcctgatcttagaa |
10131717 |
T |
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| Q |
113 |
cacttgacttatgtggttgtgtccttataacaggtatttcattcgaaattgcagtactacatatgcattgacaattagttgtggtgttctaacttttgtg |
212 |
Q |
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| T |
10131716 |
cacttgacttatgtggttgtgtccttataacaggtatttcattcgaaattgcagcactacatatgcattgacaattagttgtggtgttctaacttttgtg |
10131617 |
T |
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| Q |
213 |
attctactaatgtgcaaatttcgtctccatgttgtacctaatttacttgagcttagtttagcatagatatgtatt |
287 |
Q |
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| T |
10131616 |
attctactaatgtgcaagtttcgtctccatgttgtacctcatttacttgagcttagtttagcatagatatgtatt |
10131542 |
T |
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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 40694972 - 40695106
Alignment:
| Q |
17 |
actgcaatcagttacagtctttgaatcttggatggtgcgaacaagtcagcgatgttggagtgatgagtttagcatatggatgtcctgatcttagaacact |
116 |
Q |
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||||||||||||| ||||||||||| ||||||||||| || |||| | |||||||||||||||||| |||||||||| ||||||||||| || ||| | |
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| T |
40694972 |
actgcaatcagttgcagtctttgaaccttggatggtgtgacaaagttggtgatgttggagtgatgagtctagcatatggttgtcctgatctaaggacagt |
40695071 |
T |
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| Q |
117 |
tgacttatgtggttgtgtccttataacaggtattt |
151 |
Q |
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| T |
40695072 |
tgatttgtgtggctgtgtctatataacaggtattt |
40695106 |
T |
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