View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6792_low_32 (Length: 248)
Name: NF6792_low_32
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 7931813 - 7931586
Alignment:
| Q |
1 |
tattatttttgcacttgacaaggttaatttcatgccgccaacacctgaggatcttggatatgatgagactcaggatcttggatatgcagcgactcagggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7931813 |
tattatttttgcacttgacaaggttaatttcatgccgccaacacctgaggatcttggatatgatgagactcaggatcttggatatgcagcgactcatggt |
7931714 |
T |
|
| Q |
101 |
cttggatatgctggcattgctactcctaaaaagtttactctttcgggtcttcttaactatatggatggtttgtggtcaaggaacgaattattgtatttac |
200 |
Q |
| |
|
||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7931713 |
cttggatatactggcattgttgctcctaaaaagtttactctttcgagtcttcttaactatatggatggtttgtggtcagggaacgaattattgtatttac |
7931614 |
T |
|
| Q |
201 |
tacgaaccataaggacaaagtagaccca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
7931613 |
tacgaaccataaggacaaagtagaccca |
7931586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 8060783 - 8060995
Alignment:
| Q |
4 |
tatttttgcacttgacaaggttaatttcatgccgccaacacctgaggatcttggatatgatgagactcaggatcttggatatgcagcgactcagggtctt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8060783 |
tatttttgcacttgacaaggttaatttcatgccgccaacaccttaggatcttggatatgatgagactcaggatcttggatatgcagcgactcagggtctt |
8060882 |
T |
|
| Q |
104 |
ggatatgctggcattgctactcctaaaaagtttactctttcgggtcttcttaactatatggatggtttgtggtcaaggaacgaattattgtatttactac |
203 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8060883 |
ggatatgctggcattgctgctcctaaaaagtt------------tcttcataactatatggatggtttgtggtcaaggaacgaattattgtatttactag |
8060970 |
T |
|
| Q |
204 |
gaaccataaggacaaagtagaccca |
228 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
8060971 |
gaaccataaggacaaagtagaccca |
8060995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 8056188 - 8056084
Alignment:
| Q |
134 |
tttactctttcgggtcttcttaactatatggatggtttgtggtcaag----------gaacgaattattgtatttactacgaaccataaggacaaagtag |
223 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8056188 |
tttactctatcgggactacttaactatatggatggtttgtggtcaagttgtggcgaggaacgaattattgtatttaccacgaaccataaggacaaagtag |
8056089 |
T |
|
| Q |
224 |
accca |
228 |
Q |
| |
|
||||| |
|
|
| T |
8056088 |
accca |
8056084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 227
Target Start/End: Original strand, 8053450 - 8053562
Alignment:
| Q |
125 |
cctaaaaagtttactctttcgggtcttcttaactatatggatggtttgtggtca----------aggaacgaattattgtatttactacgaaccataagg |
214 |
Q |
| |
|
|||| |||||||||| | || ||||| ||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
8053450 |
cctagaaagtttactttgtctggtctgcttaactatatggatggtttgtggtcaagttgtggagaggaacgaattttgatatttacgacgaaccataagg |
8053549 |
T |
|
| Q |
215 |
acaaagtagaccc |
227 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
8053550 |
ataaagtagaccc |
8053562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 47546950 - 47546709
Alignment:
| Q |
1 |
tattatttttgcacttgacaaggttaatttcatgccgccaacacctgaggatcttggatat----gatgagactcaggatcttggatatgcagcgactca |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47546950 |
tattatttttgcacttgacaaggttaatttcatgccgcaaacacctgaggatcttggatatatatgatgagactcaggatcttggatatgcagcaactca |
47546851 |
T |
|
| Q |
97 |
gggtcttggatatgctggcattgctactcctaaaaagtttactctttcgggtcttcttaactatatggatggtttgtggtca----------aggaacga |
186 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47546850 |
gggtcttggatatgctggcattgctgctcctaaaaagtttactctttcgggtcttcttaactatatggatggtttgtggtcaagttgtggcgaggaacga |
47546751 |
T |
|
| Q |
187 |
attattgtatttactacgaaccataaggacaaagtagaccca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47546750 |
attattgtatttactacgaaccataaggacaaagtagaccca |
47546709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University