View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_low_36 (Length: 228)
Name: NF6792_low_36
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14873224 - 14873445
Alignment:
| Q |
1 |
ctttagcatttttaaaaggtatatacgaactagaaacaactcctcctttagctggtcctccataacaaggttttccccaaccgaaatcaacctctctaaa |
100 |
Q |
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| T |
14873224 |
ctttagcatttttaaatggtatatacgaactagaaacaactcctcctttagctggtcctccataacaaggttttccccaaccgaaatcaacctctctaaa |
14873323 |
T |
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| Q |
101 |
accagcatgtttaatatcaaccactagatatgatctcaccacagtaaaatgaggccggctctttactgcagttgtaaccgcagcaggaaatgcaaaagtg |
200 |
Q |
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| T |
14873324 |
accagcatgtttaatatcaaccactagatatgatctcaccacagtaaaatgaggccggctctttactgcagttgtaaccgcagcaggaaatgcaaaactg |
14873423 |
T |
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| Q |
201 |
ttaccgtagttaccgtttggta |
222 |
Q |
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| T |
14873424 |
ttaccgtagttaccgtttggta |
14873445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 14878011 - 14878075
Alignment:
| Q |
42 |
cctcctttagctggtcctccataacaaggttttccccaaccgaaatcaacctctctaaaaccagc |
106 |
Q |
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| T |
14878011 |
cctcctttagctggtcctccataaacagctttcccccaaccaaaatcaacatctcgaaatccagc |
14878075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 14767307 - 14767356
Alignment:
| Q |
171 |
gttgtaaccgcagcaggaaatgcaaaagtgttaccgtagttaccgtttgg |
220 |
Q |
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| T |
14767307 |
gttgtaaccgcgacaggaaatgcaaaagcattaccgtagtaaccgtttgg |
14767356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 11999661 - 11999728
Alignment:
| Q |
40 |
ctcctcctttagctggtcctccataacaaggttttccccaaccgaaatcaacctctctaaaaccagca |
107 |
Q |
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| T |
11999661 |
ctcctcctttagctggtcctccatacacaggtttcccccaaccaaactcaacatctctaaatccagca |
11999728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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