View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6792_low_38 (Length: 217)
Name: NF6792_low_38
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 6 - 214
Target Start/End: Complemental strand, 7883521 - 7883316
Alignment:
| Q |
6 |
tcaatacttcaatttctattttgaaggttctatttatggatagaggttccttcaagatcaatctttcactttcatcaatgacctttaattctttacctct |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7883521 |
tcaatacttcaatttctattttgaaggttctatttatggatagaggtgccttcaagatcaatctttcactttcatcaatgacatttaattctttacctct |
7883422 |
T |
|
| Q |
106 |
catcttcaccgaataatttctttcaagtaattgaccaagacttatcgaattactactcttcatgcttggaacaaacatcgcatcacttatgacagattga |
205 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7883421 |
catcttcaccgaatagtttctttcaagtaattgaccaagacttatcgaat---tactcttcatgcttggaacaaacatcgcatcacttatgacagattca |
7883325 |
T |
|
| Q |
206 |
tgtccatct |
214 |
Q |
| |
|
||||||||| |
|
|
| T |
7883324 |
tgtccatct |
7883316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 7898269 - 7898118
Alignment:
| Q |
1 |
atgattcaatacttcaatttctattttgaaggttctatttatggatagaggttccttcaagatcaatctttcactttcatcaatgacctttaattcttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7898269 |
atgattcaatacttcaatttctattttgaaggttctatttatggatagaggtgccttcaagatcaatctttcactttcatcaatgacctttaattctcta |
7898170 |
T |
|
| Q |
101 |
cctctcatcttcaccgaataatttctttcaagtaattgaccaagacttatcg |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7898169 |
cctctcatcttcaccgaataatttctttcaagtaattgaccaagacttatcg |
7898118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University