View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6792_low_4 (Length: 518)
Name: NF6792_low_4
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_4 |
 | |
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| [»] scaffold0002 (2 HSPs) |
| | |
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| [»] scaffold0380 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 13 - 508
Target Start/End: Complemental strand, 13219755 - 13219260
Alignment:
| Q |
13 |
atggacatcaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattcttgccaataca |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13219755 |
atggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattcttgccaataca |
13219656 |
T |
|
| Q |
113 |
ttatcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaagcctgcaatgtattgatgatgag |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
13219655 |
ttatcctcattctgttcgggattgtaatcccgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaatcctgcaatgtattgatgatgag |
13219556 |
T |
|
| Q |
213 |
tatataacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgtgttgagctaccaaagaagtaatgacccctaatga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13219555 |
tatataacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgtgttgagctaccaaagaagtaatgacccctaatga |
13219456 |
T |
|
| Q |
313 |
ggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgct |
412 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13219455 |
ggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacggcccaatctaccccccggaggaatatgtgct |
13219356 |
T |
|
| Q |
413 |
tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt |
508 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13219355 |
tctaaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt |
13219260 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 449 - 508
Target Start/End: Complemental strand, 13217095 - 13217036
Alignment:
| Q |
449 |
ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt |
508 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13217095 |
ttagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt |
13217036 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 47842150 - 47842098
Alignment:
| Q |
191 |
cctgcaatgtattgatgatgagtatataacgcagcttgagtagtaaagtcttg |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
47842150 |
cctgcaatgtattgatgatgagtatataacgcagtttgagtagtaaagtcttg |
47842098 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 47842226 - 47842174
Alignment:
| Q |
196 |
aatgtattgatgatgagtatataacgcagcttgagtagtaaagtcttgtgcta |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
47842226 |
aatgtattgatgatgagtatataacgcagcttgagtagtaaaatcctgtgcta |
47842174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 47842288 - 47842228
Alignment:
| Q |
115 |
atcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcc |
175 |
Q |
| |
|
||||||||||| ||||||||| |||| |||||||| ||||||||||||| |||||||||| |
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|
| T |
47842288 |
atcctcattctattcgggattgcaatctcgaataaagaatatcgctccataagcaaaagcc |
47842228 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 504
Target Start/End: Original strand, 237958 - 238445
Alignment:
| Q |
17 |
acatcaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattcttgccaatacattat |
116 |
Q |
| |
|
|||| ||| ||||| |||||||| || ||||| ||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
237958 |
acataaaggcccaaggtatggaatcctagaaagaggctagcccaacttaaatgagatatgatagcttctttatggtctaacattcttgccaatacattat |
238057 |
T |
|
| Q |
117 |
cctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaagcctgcaatgtattgatgatgagtata |
216 |
Q |
| |
|
||||||||||||| ||||| ||||| | ||| ||||| || |||||||||||||||||||||||||| || || || ||||| ||||| ||||||||||| |
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|
| T |
238058 |
cctcattctgttccggattgtaatccctaatgaaaaaaatagctccatgagcaaaagcccctgtcatgatgaaccccgcaatatattggtgatgagtata |
238157 |
T |
|
| Q |
217 |
taacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgtgttgagctaccaaagaagtaatgacccctaatgaggct |
316 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||| ||||||||||| || |||||||| |||||||| || ||| |
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|
| T |
238158 |
taaagcagcttgagtagtaaagtcttgtgctatgaatgcataaggaggtaaagagtacatatgttgagctactaaggaagtaataacccctaaagaagct |
238257 |
T |
|
| Q |
317 |
agagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttcta |
416 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||| |||| ||||||| |
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|
| T |
238258 |
agagcaagacctaactgaaaatgaatcgaattgttgattgtgtcataaaggcccttatgcccacgccctaatcgaccccccggaggagtatgcgcttcta |
238357 |
T |
|
| Q |
417 |
aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg |
504 |
Q |
| |
|
||| ||||| |||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||| || |||||||||||||||||| |
|
|
| T |
238358 |
aaagatctttaatactgtgcccaattccgaagttagttcgatacatgtgaccggcaatgagaaaaataaatgcaatagctaaatgatg |
238445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 504
Target Start/End: Original strand, 240602 - 240669
Alignment:
| Q |
437 |
ccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg |
504 |
Q |
| |
|
|||||||| |||| || |||||||||||||| || || || |||||||| ||||||||||||||||| |
|
|
| T |
240602 |
ccaataccccagttggtcctatacatatgacctgcgattaggaaaagaatagcaatagctaaatgatg |
240669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 10996665 - 10996334
Alignment:
| Q |
13 |
atggacatcaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattcttgccaataca |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10996665 |
atggacataaagtcccaaagtatggaaccctagaaataggatggctcaacttaaatgggatatgatagcttctttgtgctctaacatc--tgccaataca |
10996568 |
T |
|
| Q |
113 |
ttatcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaagcctgcaatgtattgatgatgag |
212 |
Q |
| |
|
|||| |||||| ||||||||||| ||||| | |||||||| ||||| ||||||||||||||| | |||||||||||| ||||||||| |||||||||||| |
|
|
| T |
10996567 |
ttattctcattatgttcgggattgtaatctcaaataaaaa-tatcgttccatgagcaaaagctcatgtcataataaatcctgcaatgaattgatgatgag |
10996469 |
T |
|
| Q |
213 |
tatataacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgtgttgagctaccaaagaagtaatgacccctaatga |
312 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10996468 |
tatataccgcagcttgagctgtaaagtcttgcgctataaacgcataagtaggtaaagagtacatgtgttgagctaccaaagaagtaatgacccctaatga |
10996369 |
T |
|
| Q |
313 |
ggctagagcaaggcctaattgaaaatgaattgaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
10996368 |
ggctagagcaaggcctaattgaaaatgaattgaat |
10996334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 3065875 - 3065837
Alignment:
| Q |
194 |
gcaatgtattgatgatgagtatataacgcagcttgagta |
232 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
3065875 |
gcaatgtattgatgatgactatataaggcagcttgagta |
3065837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 413 - 508
Target Start/End: Original strand, 18176963 - 18177058
Alignment:
| Q |
413 |
tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt |
508 |
Q |
| |
|
|||||||| ||| |||||| || |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18176963 |
tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt |
18177058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 18013446 - 18013484
Alignment:
| Q |
194 |
gcaatgtattgatgatgagtatataacgcagcttgagta |
232 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
18013446 |
gcaatgtattgatgatgactatataaggcagcttgagta |
18013484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 449 - 508
Target Start/End: Complemental strand, 39048001 - 39047942
Alignment:
| Q |
449 |
ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt |
508 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39048001 |
ttagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaatgatgatgt |
39047942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 14541323 - 14541411
Alignment:
| Q |
417 |
aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatga |
505 |
Q |
| |
|
|||| |||||||||| || |||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14541323 |
aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaatgatga |
14541411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 32566650 - 32566683
Alignment:
| Q |
272 |
tacatgtgttgagctaccaaagaagtaatgaccc |
305 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
32566650 |
tacatgtattgagctaccaaagaagtaatgaccc |
32566683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 508
Target Start/End: Complemental strand, 15723 - 15664
Alignment:
| Q |
449 |
ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt |
508 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
15723 |
ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagctagatgatgatgt |
15664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 463 - 508
Target Start/End: Complemental strand, 39386308 - 39386263
Alignment:
| Q |
463 |
atgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt |
508 |
Q |
| |
|
|||||| |||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
39386308 |
atgaccggcaatgcgaaaaagaattacaatagctaaatgatgatgt |
39386263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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