View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6792_low_5 (Length: 508)
Name: NF6792_low_5
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 10 - 486
Target Start/End: Original strand, 52385758 - 52386234
Alignment:
| Q |
10 |
acatcaacagcaacacagcttccgacagatgacaaaacagtcagtgtggtaactctggcgggcgacaacagaggagcaacaatgcatgtggcaggttccc |
109 |
Q |
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| T |
52385758 |
acatcaacagcaacacagcttccgacagatgacaaaacagtcagtgtggtaactctggcgggcgacaacagaggagcaacaatgcatgtggcaggttccc |
52385857 |
T |
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| Q |
110 |
attcccaatcaacaaggaagaaggggtcaatccacaacatacaccgaaccaaagaggaagaagagaaagatgaagcgggaaaggcatatgtgaacagcaa |
209 |
Q |
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| T |
52385858 |
attcccaatcaacaaggaagaaggggtcaatccacaacatacaccgaaccaaagaggaagaagagaaagatgaagcgggaaaggcatatgtgaacagcaa |
52385957 |
T |
|
| Q |
210 |
catacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttcatgtcattcttcccgaaaagcctgagcctcaagtt |
309 |
Q |
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| T |
52385958 |
catacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttcatgtcattcttcccgaaaagcctgagcctcaagtt |
52386057 |
T |
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| Q |
310 |
aaacaaggtttggaaaaccgcaaagctgaagttaaaacagttagccgggtagagaggttaacttaccaaccaatggttcgaagacgatgcctgagaggac |
409 |
Q |
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| T |
52386058 |
aaacaaggtttggaaaaccgcgaagctgaagttaaaacagttagccgggtagagaggttaacttaccaaccaatggttcgaagacgatgcctgagaggac |
52386157 |
T |
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| Q |
410 |
ttctggtggaaccaagtgattctgatcctgacaatcctgataaacctcgtcgtcatggctgcaaagtcagctgcgga |
486 |
Q |
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| T |
52386158 |
ttctgttggaaccaagtgattctgatcctgacaatcctgataaacctcgtcgtcatggctgcaaagtcagctgcgga |
52386234 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 7087813 - 7087895
Alignment:
| Q |
193 |
gcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttca |
275 |
Q |
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|||||||| |||||||||||||| ||||| ||||||||| | ||| | || |||||||| |||| ||||||||| || ||||| |
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| T |
7087813 |
gcatatgttaacagcaacatacaaagtatcaataattcactcatgtttcatggttcaatcaatgaaagagaccctggagttca |
7087895 |
T |
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