View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6792_low_8 (Length: 460)
Name: NF6792_low_8
Description: NF6792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6792_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 2 - 447
Target Start/End: Original strand, 9377927 - 9378375
Alignment:
| Q |
2 |
aatgagatggacatcatatctttatccaaaatcttaaaccattgagtttatggatcccatcacaatctgaatttttcttgctcaaagtttacttttctaa |
101 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9377927 |
aatgagttgaacatcatatctttatccaaaatcttaaaccattgagtttatggatcccatcacaatctgaattattcttgctcaaagtttacttttctaa |
9378026 |
T |
|
| Q |
102 |
acaatgtgagatttctgattctcattgctccaccacaaaaagaaggatgatgtcctattgttgctacatttagatgctcctcctctctttgacgtttctc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9378027 |
acaatgtgagatttctgattctcattgctccaccataaaaagaaggatgatgtcctattgttgctacatttagatgctcctcctctctttgacgtttctc |
9378126 |
T |
|
| Q |
202 |
ctgctttattaacaacgacatagaaggggaaacattataataaatttgtttatacaatttggagtttaggtttattcaagtaattgcaaccatcctcatc |
301 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9378127 |
ctgctttattaacaacggcatagaaggggaaacaatataataagtttgtttatacaatttggagtttagtgttattcaagtaattgcaaccatcctcatc |
9378226 |
T |
|
| Q |
302 |
cgtattg--tttttagttaatcctctggtttttagggaaaatgggctctgataatccggagttcggttatgaggtaaagatgatatgacctagaattgtt |
399 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9378227 |
cgtattgtttttttagttaatcctctggtttttagggaaaatgggctctgataatccggagttcggttatgaggtaaatatgatatgacctagaattgtt |
9378326 |
T |
|
| Q |
400 |
ccacacaataatcgaactcggattct-ccgaaccatccgtccttggtga |
447 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
9378327 |
ccacacagtaatggaactcggattctcccgaacgatccgtccttggtga |
9378375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 35581174 - 35581126
Alignment:
| Q |
316 |
ttaatcctctggtttttagggaaaatgggctctgataatccggagttcg |
364 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
35581174 |
ttaatcctttggtttttagggaaaatagattctgataattcggagttcg |
35581126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University