View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6793_high_1 (Length: 569)
Name: NF6793_high_1
Description: NF6793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6793_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 24884495 - 24885063
Alignment:
| Q |
1 |
tcaaccattaaaaaactagatggtgtcagttacattgagcaatcaaccttataagtgtatttagagaaattagaggacagaagacatcaatagggtaaga |
100 |
Q |
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| T |
24884495 |
tcaaccattaaaaaactagatggtgtcagttacattgagcaatcaaccttataagtgtatttagagaaattagaggacagaagacatcaatagggtaaga |
24884594 |
T |
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| Q |
101 |
tggatgagatttaaataagtgcatcacttacagtatgagcagaaaccacacacaaatttgccatccgaacaactggcttctggggattattgtccaaaat |
200 |
Q |
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| T |
24884595 |
tggatgagatttaaataagcgcatcacttacagtatgagcagaaaccacacacaaatttgccatccgaacaactggcttctggggattattgtccaaaat |
24884694 |
T |
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| Q |
201 |
gcgcatgttggaaagttcactctcaaggtccagtcgggttttacttatcattgtagtgaactgcatacattttaagatgtgcacaatgaacatgtcaagc |
300 |
Q |
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| T |
24884695 |
gcgcatgttggaaagttcactctcaaggtccagtcgggttttacttatcattgtagtgaactgcatacattttaagatgtgcacaatgaacatgtcaagc |
24884794 |
T |
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| Q |
301 |
acacctttcactgagtttgttgaagagaaacaaggtaaacaatcaacttactcttttgtcaatttcttctatgatttccatgtgacgaggaagcagtttc |
400 |
Q |
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| T |
24884795 |
acacctttcactgagtttgttgaagagaaacaaggtaaacaatcaacttactcttttgtcaatttcttctatgatttccatgtgacgaggaagcagtttc |
24884894 |
T |
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| Q |
401 |
cacattacagattgagaccatttctccagtgcttcggggaggacagtgtggttagtgtaagcaattgtcctggttaagacatagcatcatattttagtaa |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24884895 |
cacattacagattgagaccatttctccagtgcttcggggaggacagtgtggttagtgtaagcaattgtcctggttaagacatagcatcatattttagcaa |
24884994 |
T |
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| Q |
501 |
taaggaatacagtaatacgctacagaaaagtaaaccagtctagaaataaagaatatggaaaacaacttt |
569 |
Q |
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| T |
24884995 |
taaggaatacagtaatacgctacagaaaagtaaacgagtctagaaataaagaatatggaaaacaacttt |
24885063 |
T |
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