View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6793_low_1 (Length: 819)
Name: NF6793_low_1
Description: NF6793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6793_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 235 - 588
Target Start/End: Complemental strand, 34607639 - 34607280
Alignment:
| Q |
235 |
tatgatttcaattattttaatatgggtcaaaaaacaatgtagtattgtagaagatttgttttcaaaaggtttcatcattacacaattattagtgatatta |
334 |
Q |
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| T |
34607639 |
tatgatttcaattattttaacatgggtcaaaa--caatgtagtattgtagaagatttgttttcaaaaggtttcatcattacacaattattagtgatatta |
34607542 |
T |
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| Q |
335 |
atttagtattctaattatcaataagtc--------gacaaatgccgaaattgttaggtcaaatacatatgttattccgggttcaaacccgcggcccggca |
426 |
Q |
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| T |
34607541 |
atttagtattctaattatcaataagtcctagctcaggcaaatgccaaaattgttaggtcaaatacatatgttatttcgggctcaaacccgcggcctcgca |
34607442 |
T |
|
| Q |
427 |
tttgtggtcctatgatttagtagatgttgactttgttttaagtaatttatttattgattattgataggaaggacgtcctggtctgagaaaagctgcagaa |
526 |
Q |
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| T |
34607441 |
tttgtggtcctatgatttagtagatgttgactttgttttaagtaatttatttattgattattgataggaaggacgtcctggtctgagaaaagctgcagaa |
34607342 |
T |
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| Q |
527 |
tacataaagagtgagttggaattaataaaggagagagctacctctaatgtcaggtttgtgac |
588 |
Q |
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| T |
34607341 |
tacataaagagtgagttggaattaataaaggagagagctacctctaatgtcaggtttgtgac |
34607280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 34607885 - 34607690
Alignment:
| Q |
23 |
cgggtacggtctcgtatcgatgttgacatactccgttatccacatgaagttcattgttcctcttcacaacgatgctcctctcgatcgattctctgaaggc |
122 |
Q |
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| T |
34607885 |
cgggtacggtctcgtgtcgatgttgacatactccgttatccacatgaagttcattgttcctcttcacaacgatgctcctctcgatcgattctctgaaggc |
34607786 |
T |
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| Q |
123 |
agagccattcaacatgttcgtgttttgtctcatgagatcgatggtcgtcacgtgagttttcataatgttctggcggatttttcaaagtcactagtg |
218 |
Q |
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| T |
34607785 |
agagccattcaacatgttcgtgttttgtctcatgagatcgatggacgtcacgtgagttttcataatgttcaggcggatttttcaaagtcattagtg |
34607690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 700 - 806
Target Start/End: Complemental strand, 34607168 - 34607062
Alignment:
| Q |
700 |
ttgcagaattgagattgaagagagtactgttagtggctccttcaatatgaactttttgcgtcacaatatagctttgggatacagaaatcatactaatatt |
799 |
Q |
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| T |
34607168 |
ttgcagaattgagattgaagagagtactgttagtggctccttcaatatgaactttttgcgtcacaatatagctttgggatacagaaatcatactaatatt |
34607069 |
T |
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| Q |
800 |
gttatga |
806 |
Q |
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||||||| |
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| T |
34607068 |
gttatga |
34607062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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