View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6793_low_12 (Length: 266)
Name: NF6793_low_12
Description: NF6793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6793_low_12 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 25484357 - 25484079
Alignment:
| Q |
9 |
tttctattgagaggagggtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagctttggttgctat |
108 |
Q |
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| T |
25484357 |
tttctattgagatgagcgtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagctttggttgctat |
25484258 |
T |
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| Q |
109 |
tagaatctgtagaagaactagaagctgtacctccctctcttggcagaccaaacagcttattcataggaccaaacagc---------------------tt |
187 |
Q |
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| T |
25484257 |
tagaatctgtagaagaactagaagctgtacctccctctcttggcagaccaaacatcttattcataggaccaaacagcttattcataggaccaaacagctt |
25484158 |
T |
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| Q |
188 |
atacattgtccctatatatgaaaatgcatctaattaattatttcaactatataaagactacaatgtatattgcagacac |
266 |
Q |
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| T |
25484157 |
atacattgtccctatatatgaaaatgcatctaattaattatttcaactatataaagactacaatgaatattgcagacac |
25484079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 25442406 - 25442322
Alignment:
| Q |
9 |
tttctattgagaggagggtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctat |
93 |
Q |
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| T |
25442406 |
tttctagtgagatgatcgtagagatggtcaacaaaggaattgcgggtgtcaggacctctaaaactgatgaacacatcgtatctat |
25442322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 25436502 - 25436604
Alignment:
| Q |
29 |
gagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagctttggttgctattagaatctgtagaagaacta |
128 |
Q |
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| T |
25436502 |
gagatgatcaacaaaagaattgcgggtctcagaacctctaaaactgatgaacacatcgtatttatggttttcgatgctaccataatctttggaagaacta |
25436601 |
T |
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| Q |
129 |
gaa |
131 |
Q |
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||| |
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| T |
25436602 |
gaa |
25436604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 25478964 - 25479049
Alignment:
| Q |
9 |
tttctattgagaggagggtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctata |
94 |
Q |
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| T |
25478964 |
tttctagtgagatgagcatagagatggtcagcaaaggttttacgggtgtcaatacctctgaaactgataaacacgtcgtatctata |
25479049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 25636598 - 25636510
Alignment:
| Q |
9 |
tttctattgagaggagggtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagct |
97 |
Q |
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| T |
25636598 |
tttctagtgagatgagcatagagatggtcaacaaaggtgttgcgggtgtcaggacctctgaaactgataaatacatcatatttatagct |
25636510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 500347 - 500444
Alignment:
| Q |
9 |
tttctattgagaggagggtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagctttggttgct |
106 |
Q |
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| T |
500347 |
tttctaatgagatgagcatagagatgatcaacaaaagtgttgcgtgtgtcggaacctctgaaactgataaacacatcatatctatagctttggatgct |
500444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 35184004 - 35184068
Alignment:
| Q |
51 |
cgggtgtcagaacctctgaaactgatgaacacatcgtatctatagctttggttgctattagaatc |
115 |
Q |
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| T |
35184004 |
cgggtgtcagcaccacggaaactgataaacacatcatatctatagctttggatgctattggaatc |
35184068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 35169669 - 35169760
Alignment:
| Q |
5 |
accctttctattgagaggagggtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagc |
96 |
Q |
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| T |
35169669 |
accctttctagttagatgagcataaagatgatcaacaaaagtgttacgggtgtcagcgcctctgaaactgataaacacatcgtatttatagc |
35169760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 35106066 - 35106104
Alignment:
| Q |
62 |
acctctgaaactgatgaacacatcgtatctatagctttg |
100 |
Q |
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| T |
35106066 |
acctctgaaactgataaacacgtcgtatctatagctttg |
35106104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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