View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6793_low_13 (Length: 257)
Name: NF6793_low_13
Description: NF6793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6793_low_13 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 76 - 257
Target Start/End: Original strand, 25483918 - 25484096
Alignment:
| Q |
76 |
attcttaatcctcataaataagtctgttagagtgagtgttagatagagtattaaaggagagtgttcctagcatttctcttgttgttgttttgttttaagt |
175 |
Q |
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| T |
25483918 |
attcttaatcctcataaataagtctcttagagtgagtgttaaatagagtattaaaggagagtgttcttagcatttctcttgt---tgttttgttttaagt |
25484014 |
T |
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| Q |
176 |
catagtataataaacttccgtaatattggaacttgtctaattatttttgttgaggaaggaactggtgtctgcaatattcatt |
257 |
Q |
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| T |
25484015 |
catagtataataaacttccgtaatattggaacttgtctaattatttttgttgaagaaagaactggtgtctgcaatattcatt |
25484096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 25483855 - 25483885
Alignment:
| Q |
13 |
tcacaaaagagggagatgccacatataccac |
43 |
Q |
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| T |
25483855 |
tcacaaaagagggagatgccacatataccac |
25483885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 30892243 - 30892296
Alignment:
| Q |
104 |
agagtgagtgttagatagagtatta-aaggagagtgttcctagcatttctcttg |
156 |
Q |
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| T |
30892243 |
agagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctcttg |
30892296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 37306451 - 37306398
Alignment:
| Q |
104 |
agagtgagtgttagatagagtatta-aaggagagtgttcctagcatttctcttg |
156 |
Q |
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| T |
37306451 |
agagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctcttg |
37306398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 5140015 - 5139963
Alignment:
| Q |
104 |
agagtgagtgttagatagagtatta-aaggagagtgttcctagcatttctctt |
155 |
Q |
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| T |
5140015 |
agagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctctt |
5139963 |
T |
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