View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6793_low_2 (Length: 799)
Name: NF6793_low_2
Description: NF6793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6793_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 626; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 89 - 782
Target Start/End: Complemental strand, 35153233 - 35152541
Alignment:
| Q |
89 |
ctaatagggtgtagtgcctttttatgtagatggtttagagtcagattaaaccttcattcaattcagtccttaaaccaagtgattcaagtgttaacgagtt |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
35153233 |
ctaatagggtgtagtgcctttttatgtagatggtttagagtcagatgaaaccttcattcaattcagtacttaaacgaagtgattcaagtgttaacgagtt |
35153134 |
T |
|
| Q |
189 |
ccacttaaggacgaatatttcggaaaaacccaagttcagtggaattattcctagctagactttacttacccttgcgacgaaggtccggattactaggccc |
288 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
35153133 |
ccacttaaggacgaatatttcggaagaacccaagttcagtggaattattcctagctagactttacttacccttccgaccaaggtccggattactaggccc |
35153034 |
T |
|
| Q |
289 |
ctctcccctaggaataggaggattaacaataaaacactagaattctatggtatatttggtccttgaactgtagaaatataataggtagtctataaacaat |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35153033 |
ctctcccctaggaataggaggattaacaataaaacactatcatt-tatggtatatttggtccttgaactatagaaatataataggtagtctataaacaat |
35152935 |
T |
|
| Q |
389 |
tcatcggtagtttctcaagttcttttagaataggagaggcatatggtttagggactaatttgatagattgaaaatagtttatgactaatttcgtagattg |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35152934 |
tcatcggtagtttctcaagttcttttagaataggagagacatatggtttagggactaatttgatagattgaaaatagtttatgactaatttcgtagattg |
35152835 |
T |
|
| Q |
489 |
aaaatagtttaggactacttatataatatttttagtttagagaccaaataagagagagtgataatttagggaccaaattgaaggtttaatcttacagtta |
588 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35152834 |
aaaatagttgaggactacttatataatatttttagtttagagacaaaataagagagaatgataatttggggaccaaattgaaggtttaatcttacagtta |
35152735 |
T |
|
| Q |
589 |
tattacttatatggttgttactatgtgtcattcagtttcaacttgaagatgctattgagaaggaagagtttcaagaagctgcaaagctaaaaagggctat |
688 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35152734 |
tattacttatatggttgttactatgtgtcattcagtttcaacttgaagatgctattgagaaggaagagtttcaagaagctgcaaagctaaaaagggctat |
35152635 |
T |
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| Q |
689 |
agttgaagcgacgtccaaggatagtgttgctgaaattatgtctcagttgaaggtcagagcagattttgtctcggttgttttgttgtgtcttgat |
782 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35152634 |
agttgaagcgacgtccaaggatagtgttgctgaaattatgtctcagttgaaggtcagagcagattttgtcttggttgttttgttgtgtcttgat |
35152541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 35153300 - 35153263
Alignment:
| Q |
22 |
ccctttttgctcagaaatcttgcatcataaagggtgtc |
59 |
Q |
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| T |
35153300 |
ccctttttgctcagaaatcttgcatcataaagggtgtc |
35153263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 524 - 576
Target Start/End: Complemental strand, 22028461 - 22028409
Alignment:
| Q |
524 |
tttagagaccaaataagagagagtgataatttagggaccaaattgaaggttta |
576 |
Q |
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||||| ||||||||| |||||||||| ||||||| ||| |||||||||||||| |
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| T |
22028461 |
tttagggaccaaataggagagagtgaaaatttagtgacgaaattgaaggttta |
22028409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 469
Target Start/End: Complemental strand, 52173514 - 52173480
Alignment:
| Q |
435 |
tttagggactaatttgatagattgaaaatagttta |
469 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
52173514 |
tttagggactaatttgatagattgataatagttta |
52173480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 539 - 576
Target Start/End: Original strand, 52173624 - 52173661
Alignment:
| Q |
539 |
agagagagtgataatttagggaccaaattgaaggttta |
576 |
Q |
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||||||||||||| |||| ||||||||||||||||||| |
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| T |
52173624 |
agagagagtgatagtttaaggaccaaattgaaggttta |
52173661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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