View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6793_low_7 (Length: 321)
Name: NF6793_low_7
Description: NF6793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6793_low_7 |
 | |
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| [»] scaffold0752 (1 HSPs) |
| | |
|
| [»] scaffold0544 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
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| [»] scaffold0012 (1 HSPs) |
| | |
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| [»] scaffold0073 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0185 (1 HSPs) |
| | |
|
| [»] scaffold0738 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0537 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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| [»] scaffold0297 (1 HSPs) |
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| [»] scaffold0207 (1 HSPs) |
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| [»] scaffold0132 (2 HSPs) |
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| [»] scaffold0269 (1 HSPs) |
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| [»] scaffold0547 (1 HSPs) |
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|
Alignment Details
Target: scaffold0752 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0752
Description:
Target: scaffold0752; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 5683 - 5983
Alignment:
| Q |
12 |
catcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtct |
111 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||| |
|
|
| T |
5683 |
catcatttgagcatctgcatgcgctagcgattgtttccactgtgatggtaatttccatacccatcattgttgatctgatttctgttccattgaatggtct |
5782 |
T |
|
| Q |
112 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgcc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
5783 |
tagacccatttctgttcttgatttccctttgagtatgggattctcctttacagccctaacttctttctcttcagcatttcttctgtcgaacacttttgcc |
5882 |
T |
|
| Q |
212 |
ctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtcca |
311 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5883 |
ctgacccagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatatcca |
5982 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
|
|
| T |
5983 |
t |
5983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0544 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0544
Description:
Target: scaffold0544; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 6504 - 6204
Alignment:
| Q |
12 |
catcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtct |
111 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
6504 |
catcaattgagcatttgcatgctctagcgattgtttccactgtgatggtaatttccatacacatcactgctgatctgatttctattccgttgaatggtct |
6405 |
T |
|
| Q |
112 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgcc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| | || |
|
|
| T |
6404 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttattctacaacatttcttctgtcgaacacttctacc |
6305 |
T |
|
| Q |
212 |
ctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtcca |
311 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6304 |
ctgacccaaaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatatcca |
6205 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
|
|
| T |
6204 |
t |
6204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 19309500 - 19309194
Alignment:
| Q |
12 |
catcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtct |
111 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
19309500 |
catcatttgagcatctacatgctctagcgattgtttccactgtgatggtaatttccatacacatcactgctgatctgatttctgttccattgaatggtct |
19309401 |
T |
|
| Q |
112 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgcc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
19309400 |
tagacccatttctgttcttgatttccctttgagtctgggattctcctttatagccctaacttcttcttcttcagcgtttcttctgtcgaacacttctgcc |
19309301 |
T |
|
| Q |
212 |
ctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtcca |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||| |||| |
|
|
| T |
19309300 |
ctgacctagaaatccttgattagattttcataagaaggtctgtttatcatttcgaagtaatccatcatgtattgagcagcaaagtatcccttgatatcca |
19309201 |
T |
|
| Q |
312 |
tctcatt |
318 |
Q |
| |
|
| ||||| |
|
|
| T |
19309200 |
tttcatt |
19309194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 24811220 - 24810926
Alignment:
| Q |
18 |
ttgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacc |
117 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| || || || ||||||||||| ||||| ||| ||||| | |
|
|
| T |
24811220 |
ttgagcatctgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcacagcagacctgatttctgttcctttgaacggttttagaac |
24811121 |
T |
|
| Q |
118 |
catttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacc |
217 |
Q |
| |
|
|||||| ||||| ||||||||||||||| | ||||| ||||| || | || ||||||| |||||||||| | | ||||||||||||| |||||| ||| |
|
|
| T |
24811120 |
catttccgttctcgatttccctttgagtctaggattttccttcactaacttagcttcttcctcttcagcatctttcctgtcgaacacttctgccctaacc |
24811021 |
T |
|
| Q |
218 |
tagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtccat |
312 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||| | ||| | ||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24811020 |
tagaaatccttgactagattcacatacgagggtctgtttaacattttaaagtaatccgtcatgtgttgagcagcaaagtaacccttgatgtccat |
24810926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 13526958 - 13527266
Alignment:
| Q |
13 |
atcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtctt |
112 |
Q |
| |
|
|||||| ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13526958 |
atcaatcgagcatctgcatgctataacaattgtttccaccgtgatggtaatctccatacccatcactgctgatcttatttctgttccgttgaatggtctt |
13527057 |
T |
|
| Q |
113 |
agacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaa---cttcttcttcttcagcatttcttctgtcgaacacttatg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
13527058 |
agacccatttctgttcttgatttccctttgagtcagggattctcctttacaaccctgacttcttcttcttcttcagcgtttcttctgtcgaacacttctg |
13527157 |
T |
|
| Q |
210 |
ccctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtc |
309 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| || |
|
|
| T |
13527158 |
ccctgacccataaatctttgactagattttcataggaatgtctgttaatcatagtgaagtaatccaacatatgttgagcagcaaagtaatccttgatatc |
13527257 |
T |
|
| Q |
310 |
catctcatt |
318 |
Q |
| |
|
|||| |||| |
|
|
| T |
13527258 |
catcccatt |
13527266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 23481854 - 23482058
Alignment:
| Q |
18 |
ttgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacc |
117 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| || || || ||||||||||| ||||| || | | ||| |
|
|
| T |
23481854 |
ttgagcatctgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcacagcagacctgatttctgttcctttgaacggattcaaacc |
23481953 |
T |
|
| Q |
118 |
catttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacc |
217 |
Q |
| |
|
|||||| ||||||||||||||||| || || ||||||||||| ||| | ||| ||||||||||||||||| | | ||||| ||||||| |||||| ||| |
|
|
| T |
23481954 |
catttccgttcttgatttccctttaagcttaggattctccttcacaagcttaatttcttcttcttcagcatctttcctgtcaaacacttctgccctaacc |
23482053 |
T |
|
| Q |
218 |
tagaa |
222 |
Q |
| |
|
|||| |
|
|
| T |
23482054 |
cagaa |
23482058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 21673058 - 21672844
Alignment:
| Q |
23 |
catctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacccattt |
122 |
Q |
| |
|
||||||||| |||||| ||| ||||| | |||||||| || ||||| |||||||| || || |||||||| || || ||||| ||| | | |||||||| |
|
|
| T |
21673058 |
catctgcatactctagcaatagtttctgcagtgatggtgatctccattcccatcacagcagaccttatttcagtaccattgaacggtttcaaacccattt |
21672959 |
T |
|
| Q |
123 |
ctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacctagaa |
222 |
Q |
| |
|
| ||||| ||||| ||||| || || || |||||||| || | ||| ||||||||||||||||| | | || || || |||| ||| || ||| |||| |
|
|
| T |
21672958 |
ccgttctagattttcctttaagcttagggttctccttcaccagcttaatttcttcttcttcagcatctttcctatcaaatacttctgctcttacccagaa |
21672859 |
T |
|
| Q |
223 |
atccttgactagatt |
237 |
Q |
| |
|
||| || |||||||| |
|
|
| T |
21672858 |
atctttcactagatt |
21672844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 23787164 - 23787464
Alignment:
| Q |
12 |
catcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtct |
111 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||| || |||||||| ||||||||||| |
|
|
| T |
23787164 |
catcatttgagcatctgcatgctctagcgattatttccactgtgatggtaatttccatacccatcactgttgatctaatctctgttccattgaatggtct |
23787263 |
T |
|
| Q |
112 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgcc |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||| |||| |
|
|
| T |
23787264 |
tagacccatttctgttcttgattttactttgagtttgggattctcctttacagccctgacttcttcttctttaacgtttcttctgtcgaacacttctgcc |
23787363 |
T |
|
| Q |
212 |
ctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtcca |
311 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||| |||||||| |||| |
|
|
| T |
23787364 |
ctaacccagaaatccttgactagattttcataggaaggtctgtttatcatagtgaagtaatccagcatgtgttgagcagaaaagtaacccttgatatcca |
23787463 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
|
|
| T |
23787464 |
t |
23787464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 22153409 - 22153115
Alignment:
| Q |
18 |
ttgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacc |
117 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||| ||||||||||| |||||||||||||||| |||||| |||| |||||| ||||||||||||| ||| |
|
|
| T |
22153409 |
ttgagcatctgcatgctttagcaatagtttccacagtgatggtaatctccatacccatcactgttgatctgatttgtgttccattgaatggtcttaaacc |
22153310 |
T |
|
| Q |
118 |
catttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacc |
217 |
Q |
| |
|
||||||| ||||||||||||||||||| | || ||||||||||||||||| |||| |||||||| || |||||| |||| ||||| | || | | ||| |
|
|
| T |
22153309 |
catttcttctcttgatttccctttgagtctagggttctcctttacagccctgactttttcttctttggcgtttcttttgtcaaacacctctggctttacc |
22153210 |
T |
|
| Q |
218 |
tagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtccat |
312 |
Q |
| |
|
|||| |||||||| | ||||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||| || || ||||| ||||| |
|
|
| T |
22153209 |
cagaagtccttgacctggttttcataggaaggtttgttgatcatcgtgaagtaatccaacatatgttgagcagcaaaataacctttgatatccat |
22153115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 50364 - 50064
Alignment:
| Q |
12 |
catcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtct |
111 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| |
|
|
| T |
50364 |
catcatttgagcatctgcatgctctagcaattgtttccactgtgatggtaatttccatacccatcatcgctgaccttatttctgttccattgaattgtct |
50265 |
T |
|
| Q |
112 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgcc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
50264 |
tagacccatttctgttcttgatttccctttgagtctaggattctcctttacaaccctaacttcttcttcttcagtgtttcttctgtcgaacacttctgcc |
50165 |
T |
|
| Q |
212 |
ctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtcca |
311 |
Q |
| |
|
|| ||| | || |||||||||||||||||||| ||||||||||| | ||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
50164 |
ctaacccaaaagtccttgactagattttcataagaaggtctgtttaacattgtgaagtaatccatcatgtgttgagcagcaaagtatcccttgatatcca |
50065 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
|
|
| T |
50064 |
t |
50064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 1299 - 1000
Alignment:
| Q |
12 |
catcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtct |
111 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| |||| ||||||| |||||| ||||||||| | |
|
|
| T |
1299 |
catcatttgagcatctgcatgctctagcaattgtttccactatgatggtgatttccatacccatcactactgaccttatttatgttccattgaatggttt |
1200 |
T |
|
| Q |
112 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgcc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
1199 |
tagacccatttctgttcttgatttccctttgagtctgggattctcctttacaaccctaacttcttcttcttcagcgtttcttctgtcgaacacttcagcc |
1100 |
T |
|
| Q |
212 |
ctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtcca |
311 |
Q |
| |
|
|| |||||||| |||||||||||||||||||| || |||||||| ||||| ||||||||||||| ||||| |||| ||||||||||||| ||||| |||| |
|
|
| T |
1099 |
cttacctagaagtccttgactagattttcataagagggtctgtttatcattgtgaagtaatccatcatgt-ttgaacagcaaagtatcctttgatatcca |
1001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 62257 - 62555
Alignment:
| Q |
18 |
ttgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacc |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| || |||||||||| ||| |
|
|
| T |
62257 |
ttgagcatctgcatgctctagcaattgtttccaccgtgatggtaatctccatacccatcactgttgatctgatttctgttccattaaatggtcttaaacc |
62356 |
T |
|
| Q |
118 |
catttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcg----aacacttatgccct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||| || || | |||| | |
|
|
| T |
62357 |
catttctgttcttgatttccctttgagtctgggattcccctttacagccctgacttcttcttcttcagcgtttcttctgtcggtcgaaaacctctgcctt |
62456 |
T |
|
| Q |
214 |
gacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtccat |
312 |
Q |
| |
|
||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| |
|
|
| T |
62457 |
tacccagaagtccttgactaggttttcataggaaggtctgttgatcatagtgaagtaatccaacatatgttgagcagcaaagtaacctttgatatccat |
62555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 55840 - 55540
Alignment:
| Q |
12 |
catcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtct |
111 |
Q |
| |
|
||||||| |||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |||||| |||| || |||||||| |
|
|
| T |
55840 |
catcaatggagcatttgcatgctttagaaatagtttccaccatgatggtaatttccatacccatcactgttgatctaatttctattccattaaatggtct |
55741 |
T |
|
| Q |
112 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgcc |
211 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||| | | || |
|
|
| T |
55740 |
taaacccatttctgctcttgatttccctttgagtctgggatcctcctttacagccctgacttcttcttcttcagcgtttcttctatcgaacacctctacc |
55641 |
T |
|
| Q |
212 |
ctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtcca |
311 |
Q |
| |
|
| ||| |||| |||||||| || ||||||||||||||| | || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
55640 |
tttacccagaagtccttgaccaggttttcataggaaggtgtattgatcatagtgaagtaatccaacatatgttgagcagcaaagtatcccttgatatcca |
55541 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
|
|
| T |
55540 |
t |
55540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 18547077 - 18547377
Alignment:
| Q |
12 |
catcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtct |
111 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| ||||||||||||| ||| |||||||||||||||| |||||| |||| |||||| ||||||||||| |
|
|
| T |
18547077 |
catcatttgagcatctgcatgctctagcaattgtatccaccgtgatgggaatctccatacccatcactgttgatctaatttttgttccattgaatggtct |
18547176 |
T |
|
| Q |
112 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgcc |
211 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||| || |||||||||| ||||| | |||| |
|
|
| T |
18547177 |
taaacccatttcttctcttgatttccctttgagtctggggttctcttttacagccctgacttcttcttctttagtgtttcttctgtaaaacacctctgcc |
18547276 |
T |
|
| Q |
212 |
ctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtcca |
311 |
Q |
| |
|
| ||| |||| |||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |
|
|
| T |
18547277 |
tttacccagaagtccttgaccaggttttcataggacggtctgttgatcatagtgaagtaatccaacatgtgttgagcagcaaaatatcctttgatatcca |
18547376 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
|
|
| T |
18547377 |
t |
18547377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 17783236 - 17783526
Alignment:
| Q |
22 |
gcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacccatt |
121 |
Q |
| |
|
||||||||||||| ||| ||| ||||| || ||||||||||| |||||| || |||||| |||||| ||||||||||| ||||||||||||| || |||| |
|
|
| T |
17783236 |
gcatctgcatgctttagcaatagtttctactgtgatggtaatctccatatccgtcactgttgatctgatttctgttccattgaatggtcttaaactcatt |
17783335 |
T |
|
| Q |
122 |
tctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacctaga |
221 |
Q |
| |
|
||| ||||||||||||||| ||| || | ||||||||||||||||| |||||||| |||| ||| | ||||||||||||||| | |||| | ||||||| |
|
|
| T |
17783336 |
tcttctcttgatttccctttaagtatgaggttctcctttacagccctgacttcttcgtctttagcgtctcttctgtcgaacacctctgcctttacctaga |
17783435 |
T |
|
| Q |
222 |
aatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtccat |
312 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| || | ||||||||||| |
|
|
| T |
17783436 |
aatccttgaccaggttttcatatgaaggtctgttaatcatcgtgaagtaatccaacatatgttgagcagcaaaatactctttgatgtccat |
17783526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 19458495 - 19458197
Alignment:
| Q |
12 |
catcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtct |
111 |
Q |
| |
|
||||| |||||||| |||||||| ||| |||||||| || ||||||||||| |||||||||||||| || || || |||||| | || ||||| | || |
|
|
| T |
19458495 |
catcatttgagcatttgcatgctttagcgattgtttctactgtgatggtaatctccatacccatcacagcagacctgatttctatacctttgaacgaact |
19458396 |
T |
|
| Q |
112 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgcc |
211 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| | |||||||||||||| ||||| ||||||||| ||||| ||| | ||||||||||||| |||| |
|
|
| T |
19458395 |
tagacccatttccgttcttgatttccc--tgagtctaggattctcctttactaccctagtttcttcttcctcagcgtttttcctgtcgaacacttctgcc |
19458298 |
T |
|
| Q |
212 |
ctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtcca |
311 |
Q |
| |
|
| | | ||||||| ||||||||||| ||||| || ||||| || | ||| ||||||||||| ||| | |||||||||||| || ||||||||||||| |
|
|
| T |
19458297 |
cctaacgagaaatctttgactagattctcatatgagggtctttttaacattccgaagtaatccatcatattttgagcagcaaaataacccttgatgtcca |
19458198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 1654493 - 1654776
Alignment:
| Q |
20 |
gagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagaccca |
119 |
Q |
| |
|
||||||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| || || || |||| |||||| |||| ||| | ||||||| |
|
|
| T |
1654493 |
gagcatctgcatgctttagcaattgtttctacagtgatggtaatctccatacccatcacagcagacctaatttttgttcctatgaacggtttgagaccca |
1654592 |
T |
|
| Q |
120 |
tttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgaccta |
219 |
Q |
| |
|
||||| | |||||||| ||||| ||| | ||||| |||||||| | || ||||||| |||||||||| | ||||||||||||||| |||||| | | | |
|
|
| T |
1654593 |
tttctatccttgattttcctttcagtcttggattttcctttaccagcttagcttcttcctcttcagcatcttttctgtcgaacacttctgccctaatcca |
1654692 |
T |
|
| Q |
220 |
gaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatccctt |
303 |
Q |
| |
|
||| ||||| || ||||| ||| || ||| |||| | ||| |||||||| | ||| ||||||||||||||||| ||||| |
|
|
| T |
1654693 |
gaagtcctttaccagattcatataagatggtttgttcaacatttcaaagtaatcaaccatttgttgagcagcaaagtaaccctt |
1654776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 25683174 - 25683039
Alignment:
| Q |
53 |
gtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacccatttctgttcttgatttccctttgagtttgggat |
152 |
Q |
| |
|
|||||||| || ||||| |||||||| || ||||||||||| || || || || ||| | | ||||||||| ||||||||||| || || || || || | |
|
|
| T |
25683174 |
gtgatggtgatctccattcccatcacagcggatcttatttcagtccctttaaacggtttcaaacccatttcagttcttgatttacccttaagcttagggt |
25683075 |
T |
|
| Q |
153 |
tctcctttacagccctaacttcttcttcttcagcat |
188 |
Q |
| |
|
|||||||||| | | | ||||||||||||||||| |
|
|
| T |
25683074 |
tctcctttaccatcttcatttcttcttcttcagcat |
25683039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 12877 - 13177
Alignment:
| Q |
12 |
catcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtct |
111 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||||| || ||||||||||| |||||||||||||| || || || ||||||||||| ||| ||||||| |
|
|
| T |
12877 |
catcatttgagcatctgcatgctttagcgattgtttcgactgtgatggtaatctccatacccatcacagcagacctgatttctgttccattggatggtct |
12976 |
T |
|
| Q |
112 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgcc |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||| |||||||||| ||||| ||||| ||||||||||||| ||| |
|
|
| T |
12977 |
tagacccatttccgttcttgatttccctttgagtctaggattctcctttacaaccctagcttcttcttcctcagcgtttctcctgtcgaacacttcagcc |
13076 |
T |
|
| Q |
212 |
ctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtcca |
311 |
Q |
| |
|
|| ||| ||||||| ||||||||||| ||||| ||||||||||| | ||| | ||||||||||| ||||| ||||||||||| || ||||||||||||| |
|
|
| T |
13077 |
cttacccagaaatctttgactagattctcataagaaggtctgtttaacattgcgaagtaatccatcatgttctgagcagcaaaataacccttgatgtcca |
13176 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
|
|
| T |
13177 |
t |
13177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0738 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0738
Description:
Target: scaffold0738; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 1117 - 827
Alignment:
| Q |
22 |
gcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacccatt |
121 |
Q |
| |
|
|||||| ||| || ||| ||| ||||| || ||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
1117 |
gcatctacattctttagcaatagtttctactgtgatggtaatctccatacccatcactgttgatctgatttctgttccattgaatggtcttaaacccatt |
1018 |
T |
|
| Q |
122 |
tctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacctaga |
221 |
Q |
| |
|
||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| ||| ||| | ||||||||||| | |||| | || |||| |
|
|
| T |
1017 |
tcttctcttgatttccctttgagtctggggttctcctttacagccctgacttcttcttctttagcgtttttcctgtcgaacacctctgcctttacataga |
918 |
T |
|
| Q |
222 |
aatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtccat |
312 |
Q |
| |
|
| |||||||| || |||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||| |||| || || ||||| ||||| |
|
|
| T |
917 |
agtccttgaccaggttttcatatgaaggtctgttgatcatcgtgaagtaatccaacatatgttgagcaacaaaataacctttgatatccat |
827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 20880132 - 20879832
Alignment:
| Q |
12 |
catcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtct |
111 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||| |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| || |||||||| |
|
|
| T |
20880132 |
catcaatcgagcatctgcatgctttagcaatagtttccaccgtgatggtaatctccatacccatcactgttgatctgatttctgttccattaaatggtct |
20880033 |
T |
|
| Q |
112 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgcc |
211 |
Q |
| |
|
|| || ||||||| ||||||||| ||||||||| |||| |||||||||||| |||| ||||||||||||| |||| |||| ||| |||||| | |||| |
|
|
| T |
20880032 |
taaactcatttcttctcttgattttcctttgagtctggggttctcctttacaaccctgacttcttcttcttttgcatctcttatgttgaacacctctgcc |
20879933 |
T |
|
| Q |
212 |
ctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtcca |
311 |
Q |
| |
|
| ||| |||| |||||||| || |||||||||||||||||||| |||||||||||||| || | ||| ||||||||| ||||| | || ||||| |||| |
|
|
| T |
20879932 |
tttacccagaagtccttgaccaggttttcataggaaggtctgttgatcatagtgaagtagtcaagcatatgttgagcaacaaagaaacctttgatatcca |
20879833 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
|
|
| T |
20879832 |
t |
20879832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 22646484 - 22646703
Alignment:
| Q |
18 |
ttgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacc |
117 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| || || || ||||||||||| ||||| ||| ||||||| |
|
|
| T |
22646484 |
ttgagcatctgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcacagcagacctgatttctgttcctttgaacggttttagacc |
22646583 |
T |
|
| Q |
118 |
catttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacc |
217 |
Q |
| |
|
|||||| ||||| ||||||||||||||| | ||||| |||||||| |||| ||||||| |||||||| | | | ||||||||||||| |||||| ||| |
|
|
| T |
22646584 |
catttccgttctcgatttccctttgagtctaggattttcctttactaacctagcttcttcctcttcagcgtctttcctgtcgaacacttctgccctaacc |
22646683 |
T |
|
| Q |
218 |
tagaaatccttgactagatt |
237 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
22646684 |
cagaaatccttgacaagatt |
22646703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 7682949 - 7683048
Alignment:
| Q |
118 |
catttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacc |
217 |
Q |
| |
|
|||||||||||||||||||||||| || || || |||| |||||| | | |||||||||||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
7682949 |
catttctgttcttgatttccctttcagcttagggttcttctttaccatctcagattcttcttcttcagcagcttttctgtcgaacacttctgccctgacc |
7683048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 108638 - 108938
Alignment:
| Q |
12 |
catcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtct |
111 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| | || || ||||||||||| ||||| ||||| |
|
|
| T |
108638 |
catcatttgagcatctgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcacagtagacctgatttctgttcctttgaacggtct |
108737 |
T |
|
| Q |
112 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgcc |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | |||||||||||||| | ||| |||||||||| ||||| || | ||||||||||||| |||| |
|
|
| T |
108738 |
tagacccatttccgttcttgatttccctttgagtctaggattctcctttactacgctagcttcttcttcctcagcgattttcctgtcgaacacttctgcc |
108837 |
T |
|
| Q |
212 |
ctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtcca |
311 |
Q |
| |
|
|| ||| ||||||| ||||||||||| ||||| ||| ||||||| | ||| ||||||||||| ||| | |||||||||||| || ||||||||||||| |
|
|
| T |
108838 |
ctcacccagaaatctttgactagattctcatatgaaagtctgttcaacattacgaagtaatccatcatattttgagcagcaaaataacccttgatgtcca |
108937 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
|
|
| T |
108938 |
t |
108938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 3164 - 2870
Alignment:
| Q |
18 |
ttgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacc |
117 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| || || || ||||||||||| ||||| ||| ||||| | |
|
|
| T |
3164 |
ttgagcatctgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcacagcagacctgatttctgttcctttgaacggttttagaac |
3065 |
T |
|
| Q |
118 |
catttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacc |
217 |
Q |
| |
|
|||||| ||||| ||||||||||||||| | ||||| ||||| || | || ||||||| |||||||||| | | ||||||||||||| |||||| ||| |
|
|
| T |
3064 |
catttccgttctcgatttccctttgagtctaggattttccttcactaacttagcttcttcctcttcagcatctttcctgtcgaacacttctgccctaacc |
2965 |
T |
|
| Q |
218 |
tagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtccat |
312 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||| | ||| | ||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2964 |
tagaaatccttgactagattcacatacgagggtctgtttaacattttaaagtaatccgtcatgtgttgagcagcaaagtaacccttgatgtccat |
2870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 13181287 - 13180987
Alignment:
| Q |
12 |
catcaattgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtct |
111 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||| |||| || ||||||||||| |||||||||||||| || || || ||||||||||| ||||||||| | |
|
|
| T |
13181287 |
catcatttgagcatctgcatgctttagcaattatttctactgtgatggtaatctccatacccatcacagcagacctgatttctgttcctttgaatggttt |
13181188 |
T |
|
| Q |
112 |
tagacccatttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgcc |
211 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||| | ||||| |||||||| |||| | ||||| |||||||| | | | || |||||||||| |||| |
|
|
| T |
13181187 |
taaacccatttccgttcttgatttccctttgagtctaggattttcctttactaacctagcctcttcctcttcagcgtctttcctatcgaacacttctgcc |
13181088 |
T |
|
| Q |
212 |
ctgacctagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtcca |
311 |
Q |
| |
|
|| ||| ||||||| ||||| ||||| ||||| ||||||||||| | |||| | || || |||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13181087 |
ctaacccagaaatctttgacaagattctcatacgaaggtctgttcaacatattaaaatagtccatcatgtgttgagcagcaaagtaacccttgatgtcca |
13180988 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
|
|
| T |
13180987 |
t |
13180987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 162087 - 161793
Alignment:
| Q |
18 |
ttgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacc |
117 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||| || |||||| |||| |||||||||||||| | || || ||||||||||| ||| | ||| ||||||| |
|
|
| T |
162087 |
ttgagcatctgcaagctttagcaattgtttctactgtgatgataatctccatacccatcacaacagacctgatttctgttcctttgcacggttttagacc |
161988 |
T |
|
| Q |
118 |
catttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacc |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||| | ||||| ||||||| |||| ||||||| |||||||| | | | ||||||||||||| |||||| ||| |
|
|
| T |
161987 |
catttccgttcttgatttccctttgagtctaggattttcctttattaacctagcttcttcctcttcagcgtctttcctgtcgaacacttctgccctaacc |
161888 |
T |
|
| Q |
218 |
tagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtccat |
312 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| || | ||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
161887 |
cagaaatccttgactagattctcatacgaaggtctattcaacattccgaagtaatccatcatgtgttgagcagcaaagtaacccttgatgtccat |
161793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 13142889 - 13143183
Alignment:
| Q |
18 |
ttgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacc |
117 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||| || |||||| |||| |||||||||||||| | || || ||||||||||| ||| | ||| ||||||| |
|
|
| T |
13142889 |
ttgagcatctgcaagctttagcaattgtttctactgtgatgataatctccatacccatcacaacagacctgatttctgttcctttgcacggttttagacc |
13142988 |
T |
|
| Q |
118 |
catttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacc |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||| | ||||| ||||||| |||| ||||||| |||||||| | | | ||||||||||||| |||||| ||| |
|
|
| T |
13142989 |
catttccgttcttgatttccctttgagtctaggattttcctttattaacctagcttcttcctcttcagcgtctttcctgtcgaacacttctgccctaacc |
13143088 |
T |
|
| Q |
218 |
tagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtccat |
312 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| || | ||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13143089 |
cagaaatccttgactagattctcatacgaaggtctattcaacattccgaagtaatccatcatgtgttgagcagcaaagtaacccttgatgtccat |
13143183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 306
Target Start/End: Original strand, 15837009 - 15837288
Alignment:
| Q |
27 |
tgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacccatttctgt |
126 |
Q |
| |
|
|||||||| ||| ||||||||| || |||||||||||||||||||||||||| || || ||||| || || || ||||||||| | ||||||||||| || |
|
|
| T |
15837009 |
tgcatgctttagcaattgtttctacagtgatggtaatttccatacccatcacagcagaccttatctccgtaccattgaatggtttaagacccatttcagt |
15837108 |
T |
|
| Q |
127 |
tcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacctagaaatcc |
226 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||| | || ||||||||| |||||| | | ||| ||| |||||| |||| | ||| |||| ||| |
|
|
| T |
15837109 |
ccttgatttccctttgagtcctggatttttctttaccagcttagcttcttctttttcagcgtcttgtctatcgtacacttctgccttaacccagaagtcc |
15837208 |
T |
|
| Q |
227 |
ttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgat |
306 |
Q |
| |
|
|| || || || || ||||||||||| | ||| ||||||| |||| ||| ||||||| |||||||||||||||| |
|
|
| T |
15837209 |
ttcaccaggttcatgtacgaaggtctgttcagcattttgaagtattccatcatctgttgagtgacaaagtatcccttgat |
15837288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0537 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0537
Description:
Target: scaffold0537; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 129 - 312
Target Start/End: Complemental strand, 2016 - 1833
Alignment:
| Q |
129 |
ttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacctagaaatcctt |
228 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||| | ||||||||||||||||| | |||| | |||||||| ||||| |
|
|
| T |
2016 |
ttgatttccctttgagtctggggttctcctttacagccttgacttcttcttcttcaacgtttcttctgtcgaacacctctgcctttacctagaagtcctt |
1917 |
T |
|
| Q |
229 |
gactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgatgtccat |
312 |
Q |
| |
|
||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| |
|
|
| T |
1916 |
gaccaggttttcataggaaggtctgttgatcatagtgaagtaatccaacatatgttgagcagcaaagtaacctttgatatccat |
1833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 7000 - 6712
Alignment:
| Q |
18 |
ttgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacc |
117 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| | |||||||| || ||||||||||||||| | || || ||||| ||||| | |||||| | ||||| |
|
|
| T |
7000 |
ttgagcatctgcatgctttagcaattgtttcttcagtgatggtgatctccatacccatcacttcagacctaatttcagttcctcttaatggtttaagacc |
6901 |
T |
|
| Q |
118 |
catttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgacc |
217 |
Q |
| |
|
|||||| || || ||||||||||||| | | ||||| |||||||| | || || |||| |||||||| | | | ||||| ||||||| |||||| ||| |
|
|
| T |
6900 |
catttcagtcctcgatttccctttgaatcttggattttcctttaccagcttagctacttcctcttcagcgtctttcctgtcaaacacttctgccctaacc |
6801 |
T |
|
| Q |
218 |
tagaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgat |
306 |
Q |
| |
|
||||| ||||| || |||||| || ||||||||||| | ||| ||||||||| | ||| ||||||| ||||||||| |||||||| |
|
|
| T |
6800 |
tagaagtcctttaccagatttatgtatgaaggtctgtttaacatttcgaagtaatcaaccatatgttgagtagcaaagtaacccttgat |
6712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0297 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0297
Description:
Target: scaffold0297; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 20399 - 20685
Alignment:
| Q |
20 |
gagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagaccca |
119 |
Q |
| |
|
||||||||||||||| ||| |||| |||| | || ||||||| ||||||||||||||| || || || |||| |||||| |||| ||| | ||||||| |
|
|
| T |
20399 |
gagcatctgcatgctttagcaattttttctagagtcatggtaacttccatacccatcacagcagacctaatttatgttcctctgaacggtttgagaccca |
20498 |
T |
|
| Q |
120 |
tttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgaccta |
219 |
Q |
| |
|
||||| | |||||||| ||||| | | | ||||| |||||||| | || ||||||| |||||||||| | ||||||||||||||| |||||| | | | |
|
|
| T |
20499 |
tttctatccttgattttcctttcaatcttggattttcctttaccagcttagcttcttcctcttcagcatcttttctgtcgaacacttctgccctaatcca |
20598 |
T |
|
| Q |
220 |
gaaatccttgactagattttcataggaaggtctgttaatcatagtgaagtaatccaacatgtgttgagcagcaaagtatcccttgat |
306 |
Q |
| |
|
||| ||||| || ||||| ||| || |||||||| | ||| ||||||||| | ||| |||| |||||||||||| |||||||| |
|
|
| T |
20599 |
gaagtcctttaccagattcatatacgatggtctgttcaacatttcgaagtaatcaaccatctgttaagcagcaaagtaacccttgat |
20685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0207 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0207
Description:
Target: scaffold0207; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 24190 - 24407
Alignment:
| Q |
20 |
gagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagaccca |
119 |
Q |
| |
|
||||||||||||||| ||| ||||||||| || ||||| |||| |||||||||||||| || || || |||| |||||| |||| ||| | ||||||| |
|
|
| T |
24190 |
gagcatctgcatgctttagcaattgtttctacaatgatgataatctccatacccatcacagcagacctaatttatgttcctctgaacggtttgagaccca |
24289 |
T |
|
| Q |
120 |
tttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccctgaccta |
219 |
Q |
| |
|
|||| | || ||||||||||||||| | ||||| || || || | || |||||||||||||||||| | ||||||||||||||| |||||| ||| | |
|
|
| T |
24290 |
tttccgccctcgatttccctttgagtctaggattttctttcaccagcttagcttcttcttcttcagcatcttttctgtcgaacacttctgccctaaccca |
24389 |
T |
|
| Q |
220 |
gaaatccttgactagatt |
237 |
Q |
| |
|
||| ||||| || ||||| |
|
|
| T |
24390 |
gaagtcctttaccagatt |
24407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 21631 - 21438
Alignment:
| Q |
20 |
gagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagaccca |
119 |
Q |
| |
|
||||||| ||||||| ||| ||||||||| || |||||||||| |||||||||||||| || || |||| || || || ||||||||| | ||||||| |
|
|
| T |
21631 |
gagcatccgcatgctttagcaattgtttctacagtgatggtaaggtccatacccatcacagcagaccttaactcagtacctttgaatggtttgagaccca |
21532 |
T |
|
| Q |
120 |
tttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccct |
213 |
Q |
| |
|
|||| || || ||||||||||||| | | | ||| |||||||| | || ||||||| |||||| ||| | || |||||||||||| |||||| |
|
|
| T |
21531 |
tttcagtcctcgatttccctttgaatcttgtattttcctttaccagcttagcttcttcctcttcaacatcttttatgtcgaacacttctgccct |
21438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 34832 - 34639
Alignment:
| Q |
20 |
gagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagaccca |
119 |
Q |
| |
|
||||||| ||||||| ||| ||||||||| || |||||||||| |||||||||||||| || || | ||| | || || ||||||||| | ||||||| |
|
|
| T |
34832 |
gagcatccgcatgctttagcaattgtttctacagtgatggtaaggtccatacccatcacagcagaccatatcttagtacctttgaatggtttgagaccca |
34733 |
T |
|
| Q |
120 |
tttctgttcttgatttccctttgagtttgggattctcctttacagccctaacttcttcttcttcagcatttcttctgtcgaacacttatgccct |
213 |
Q |
| |
|
|||| || || ||||||||||||| | | | ||| |||||||| | || ||||||| |||||| ||| | || |||||||||||| |||||| |
|
|
| T |
34732 |
tttcagtcctcgatttccctttgaatcttgaattttcctttaccagcttagcttcttcctcttcaacatcttttatgtcgaacacttctgccct |
34639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0269 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0269
Description:
Target: scaffold0269; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 10724 - 10847
Alignment:
| Q |
18 |
ttgagcatctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacc |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||| || || | || || |||| ||||| ||||| |
|
|
| T |
10724 |
ttgagcatctgcatgctctagctattgtttcctgagtgatggtgatctccatacccatcactgctgacctgatcttagtgcctctgaacggtctgagacc |
10823 |
T |
|
| Q |
118 |
catttctgttcttgatttcccttt |
141 |
Q |
| |
|
|||||| || |||||||| ||||| |
|
|
| T |
10824 |
catttcagtccttgattttccttt |
10847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0547 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0547
Description:
Target: scaffold0547; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 4403 - 4542
Alignment:
| Q |
23 |
catctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacccattt |
122 |
Q |
| |
|
||||||||| |||||| ||| ||||| | |||||||| || ||||| |||||||| || ||||||||||| || || ||||| ||| | | ||||||| |
|
|
| T |
4403 |
catctgcatactctagcaatagtttctgcagtgatggtgatctccattcccatcacagcagatcttatttcagtacccttgaacggtttcaatcccattt |
4502 |
T |
|
| Q |
123 |
ctgttcttgatttccctttgagtttgggattctcctttac |
162 |
Q |
| |
|
| |||||||||| ||||| || || || ||||||||||| |
|
|
| T |
4503 |
ccattcttgattttcctttaagcttcgggttctcctttac |
4542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 16815856 - 16815717
Alignment:
| Q |
23 |
catctgcatgctctagaaattgtttccaccgtgatggtaatttccatacccatcactgctgatcttatttctgttccgttgaatggtcttagacccattt |
122 |
Q |
| |
|
||||||||| |||||| ||| ||||| | |||||||| || ||||| |||||||| || ||||||||||| || || ||||| ||| | | ||||||| |
|
|
| T |
16815856 |
catctgcatactctagcaatagtttctgcagtgatggtgatctccattcccatcacagcagatcttatttcagtacccttgaacggtttcaatcccattt |
16815757 |
T |
|
| Q |
123 |
ctgttcttgatttccctttgagtttgggattctcctttac |
162 |
Q |
| |
|
| |||||||||| ||||| || || || ||||||||||| |
|
|
| T |
16815756 |
ccattcttgattttcctttaagcttcgggttctcctttac |
16815717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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