View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6794_high_2 (Length: 357)
Name: NF6794_high_2
Description: NF6794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6794_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 38 - 250
Target Start/End: Complemental strand, 37530145 - 37529934
Alignment:
| Q |
38 |
gcgcttaaatattggtgtaagaatcaaatataaaaaataatgtgttgagaaatgatgaatccaactttataaaaattttaaaatcgttgtttcaaatata |
137 |
Q |
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| T |
37530145 |
gcgcttaaatattggtgtaagaatcaaatataaaaa-taatgtgttgagaaatgatgaatctaactttataaaaaatttaaaatcgttgtttcaaatgta |
37530047 |
T |
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| Q |
138 |
aaactatcattttagtttatggggcactagttaagagatttttaaaataaaagcaaaattcaattaccaacattataattaatagttaattgcagtttac |
237 |
Q |
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| T |
37530046 |
aaactatcattttagtttatggggcactagttaagagatttttaaaataaaagcaaaattcaattaccaacattataattaatagttaattgcagtttac |
37529947 |
T |
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| Q |
238 |
ccttaaatttaac |
250 |
Q |
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| T |
37529946 |
ccttaaatttaac |
37529934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 37529872 - 37529835
Alignment:
| Q |
315 |
ccaaaactacaatcaaatatgaatttttgttatattct |
352 |
Q |
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| T |
37529872 |
ccaaaactacaatcaaatatgaatttttgttgtattct |
37529835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 29384279 - 29384212
Alignment:
| Q |
72 |
aaataatgtgttgagaaatgatgaatccaactttataaaaattttaaaatcgttgtttcaaatataaa |
139 |
Q |
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| T |
29384279 |
aaataatgtgttgagaaatggtgaattcatcttcataaaaattttaaaattgttttttccaatgtaaa |
29384212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 21051627 - 21051570
Alignment:
| Q |
72 |
aaataatgtgttgagaaatgatgaatccaactttataaaaattttaaaatcgttgttt |
129 |
Q |
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||||| |||||||| ||||| ||||| ||||||||||||| ||| ||||||||||||| |
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| T |
21051627 |
aaatattgtgttgaaaaatggtgaattcaactttataaaagtttgaaaatcgttgttt |
21051570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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