View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6794_high_5 (Length: 280)
Name: NF6794_high_5
Description: NF6794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6794_high_5 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 34633031 - 34633310
Alignment:
| Q |
1 |
tcacataccttttccaaatcaaccagaagcttataacttgccacaatcaactgtaatgatttctcagtcctcagcatatggaagactgccccaagtattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34633031 |
tcacataccttttccaaatcaaccagaagcttataacttgccacaatcaactgtaatgatttctcagtcctcagcatatggaagactgccccaagtattt |
34633130 |
T |
|
| Q |
101 |
ttctacacaatttaaaaatatatttatatactcaactcagaacacaaaaatgaagacaaaattcaatatttctaacaaatacaacttgttatagacgaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34633131 |
ttctacacaatttaaaaatatatttatatactcaactcagaacacaaaaatgaagacaaaattcaatatttctaacaaatacaacttgttatagaggaga |
34633230 |
T |
|
| Q |
201 |
attaaccacgtattcaaaaataaaattttccctcaaaaagtgtaagtgtgtgtgtactacctcaaacacaaacaccaaac |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34633231 |
attaaccacgtattcaaaaataaaattttccctcaaaaagtgtaagtgtgtgtgtactacctcaaacacaaacaccaaac |
34633310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 14301269 - 14301527
Alignment:
| Q |
1 |
tcacataccttttccaaatcaaccagaagcttataacttgccacaatcaactgtaatgatttctcagtcctcagcatatggaagactgccccaagtattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
14301269 |
tcacataccttttccaaatcaaccagaagcttatgacatgccattatcaactgtaatgacttcacagtcctcagcatatggaagactaccccacatattt |
14301368 |
T |
|
| Q |
101 |
ttctacacaatttaaaaatatatttatatactcaactcagaacacaaaaatgaagacaaaattcaatatttctaacaaatacaacttg-ttatagacgag |
199 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| ||||||||||| ||| |||||||||||||||| | | |||||||||||| ||||||| ||| |
|
|
| T |
14301369 |
ttctacacaattt-aaaatatattcatatactcaatgtagaacacaaaagtgataacaaaattcaatatttttgataaatacaacttgcttatagaggag |
14301467 |
T |
|
| Q |
200 |
aattaacc-acgtattc--aaaaataaaattttccctcaaaaagtgtaagtgtgtgtgta |
256 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
14301468 |
aattaacctatatattcaaaaaaataaaattttctctcaaaaagtataagcatgtgtgta |
14301527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University