View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6794_low_1 (Length: 533)

Name: NF6794_low_1
Description: NF6794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6794_low_1
NF6794_low_1
[»] chr5 (21 HSPs)
chr5 (121-525)||(536899-537289)
chr5 (34-343)||(4557610-4557919)
chr5 (19-116)||(537340-537437)
chr5 (334-521)||(4557935-4558133)
chr5 (449-525)||(536815-536891)
chr5 (69-176)||(25101568-25101671)
chr5 (69-176)||(25160661-25160764)
chr5 (38-100)||(42861880-42861942)
chr5 (204-273)||(6309116-6309184)
chr5 (122-173)||(104702-104753)
chr5 (121-274)||(30910117-30910267)
chr5 (121-274)||(38001301-38001449)
chr5 (136-237)||(42861769-42861869)
chr5 (53-112)||(6309214-6309272)
chr5 (122-200)||(40691266-40691343)
chr5 (34-116)||(40691395-40691476)
chr5 (117-173)||(6309186-6309241)
chr5 (197-247)||(6308999-6309049)
chr5 (89-144)||(6309107-6309166)
chr5 (220-273)||(42861770-42861823)
chr5 (222-270)||(6309083-6309130)
[»] chr7 (24 HSPs)
chr7 (121-525)||(15873712-15874102)
chr7 (19-289)||(22077977-22078244)
chr7 (19-289)||(21491085-21491353)
chr7 (19-275)||(18366919-18367173)
chr7 (23-237)||(48653439-48653649)
chr7 (334-523)||(21491459-21491659)
chr7 (18-116)||(10288379-10288477)
chr7 (19-249)||(11035972-11036210)
chr7 (19-116)||(15873564-15873661)
chr7 (410-521)||(22077720-22077831)
chr7 (19-198)||(9993756-9993939)
chr7 (449-513)||(18367412-18367476)
chr7 (402-513)||(48576426-48576538)
chr7 (258-343)||(21491358-21491443)
chr7 (121-200)||(10288528-10288606)
chr7 (180-249)||(9993633-9993702)
chr7 (125-274)||(12911434-12911581)
chr7 (121-200)||(40106201-40106279)
chr7 (258-340)||(18367192-18367274)
chr7 (53-174)||(49169964-49170092)
chr7 (121-236)||(12196433-12196547)
chr7 (223-274)||(12196497-12196548)
chr7 (220-273)||(48653595-48653648)
chr7 (334-401)||(18367293-18367363)
[»] chr3 (23 HSPs)
chr3 (121-525)||(5004457-5004885)
chr3 (121-525)||(46404338-46404727)
chr3 (19-289)||(11937478-11937735)
chr3 (334-525)||(16975339-16975515)
chr3 (121-281)||(16975629-16975789)
chr3 (19-116)||(7336283-7336380)
chr3 (19-116)||(46404190-46404287)
chr3 (19-116)||(16975840-16975937)
chr3 (117-249)||(9104522-9104654)
chr3 (24-100)||(5004325-5004401)
chr3 (34-112)||(9104627-9104705)
chr3 (441-523)||(11967971-11968053)
chr3 (258-343)||(16975531-16975616)
chr3 (127-252)||(8731144-8731269)
chr3 (127-252)||(9083031-9083156)
chr3 (53-173)||(17542329-17542444)
chr3 (121-200)||(7336431-7336509)
chr3 (262-343)||(11937744-11937825)
chr3 (121-173)||(43277783-43277834)
chr3 (204-267)||(17542446-17542508)
chr3 (185-247)||(17542500-17542562)
chr3 (443-495)||(8730913-8730966)
chr3 (443-495)||(9082800-9082853)
[»] scaffold0413 (2 HSPs)
scaffold0413 (180-525)||(8925-9279)
scaffold0413 (19-65)||(1-47)
[»] chr6 (20 HSPs)
chr6 (121-525)||(34636272-34636656)
chr6 (19-289)||(32449855-32450122)
chr6 (121-436)||(10751297-10751636)
chr6 (334-525)||(25005229-25005429)
chr6 (334-525)||(23260544-23260743)
chr6 (334-525)||(32450228-32450428)
chr6 (19-116)||(34636707-34636804)
chr6 (23-237)||(13773025-13773235)
chr6 (121-259)||(23260351-23260489)
chr6 (34-116)||(10751164-10751246)
chr6 (136-266)||(26182392-26182522)
chr6 (265-343)||(32450134-32450212)
chr6 (21-87)||(20558043-20558109)
chr6 (19-87)||(24164335-24164403)
chr6 (102-247)||(24163272-24163416)
chr6 (157-237)||(20555629-20555709)
chr6 (298-343)||(23260483-23260528)
chr6 (69-118)||(26182339-26182388)
chr6 (224-273)||(13773185-13773234)
chr6 (88-116)||(23260272-23260300)
[»] chr1 (29 HSPs)
chr1 (121-453)||(37666915-37667271)
chr1 (23-289)||(35761646-35761909)
chr1 (334-525)||(35762015-35762217)
chr1 (117-289)||(19198447-19198622)
chr1 (30-174)||(18472537-18472677)
chr1 (18-116)||(43406955-43407053)
chr1 (19-116)||(37666767-37666864)
chr1 (410-521)||(9537406-9537517)
chr1 (18-116)||(338628-338726)
chr1 (19-112)||(6836422-6836515)
chr1 (262-343)||(35761918-35761999)
chr1 (443-521)||(16074800-16074879)
chr1 (121-236)||(16075097-16075211)
chr1 (121-200)||(43407104-43407182)
chr1 (119-230)||(28561778-28561890)
chr1 (475-525)||(37667265-37667315)
chr1 (121-274)||(338431-338577)
chr1 (121-200)||(9537128-9537206)
chr1 (185-247)||(6836246-6836308)
chr1 (125-205)||(25921874-25921953)
chr1 (53-112)||(19198416-19198474)
chr1 (122-200)||(8421953-8422030)
chr1 (133-195)||(26317615-26317677)
chr1 (121-174)||(33007388-33007440)
chr1 (220-274)||(16075096-16075150)
chr1 (41-86)||(36386378-36386423)
chr1 (117-173)||(6836394-6836449)
chr1 (53-87)||(24055824-24055858)
chr1 (53-87)||(24276028-24276062)
[»] chr4 (20 HSPs)
chr4 (19-289)||(49499403-49499671)
chr4 (19-236)||(2761698-2761911)
chr4 (18-116)||(40459471-40459569)
chr4 (410-521)||(28969233-28969344)
chr4 (334-531)||(49499091-49499297)
chr4 (258-343)||(49499313-49499398)
chr4 (121-250)||(40459293-40459420)
chr4 (53-116)||(55162712-55162774)
chr4 (185-247)||(69628-69690)
chr4 (34-116)||(28968844-28968925)
chr4 (121-174)||(55162571-55162623)
chr4 (53-112)||(69810-69868)
chr4 (121-200)||(28968976-28969059)
chr4 (204-273)||(69712-69780)
chr4 (102-173)||(42899892-42899960)
chr4 (117-173)||(69782-69837)
chr4 (123-197)||(13652928-13653002)
chr4 (123-197)||(13661053-13661127)
chr4 (118-197)||(41869076-41869157)
chr4 (89-144)||(69703-69762)
[»] chr8 (11 HSPs)
chr8 (23-229)||(40841119-40841322)
chr8 (34-173)||(22815930-22816064)
chr8 (89-273)||(44436442-44436620)
chr8 (121-174)||(41958159-41958211)
chr8 (90-176)||(22635692-22635774)
chr8 (188-249)||(35840649-35840710)
chr8 (34-144)||(44436597-44436703)
chr8 (53-110)||(3189092-3189148)
chr8 (53-118)||(22635627-22635691)
chr8 (117-176)||(3189123-3189181)
chr8 (156-200)||(35840736-35840780)
[»] chr2 (22 HSPs)
chr2 (19-237)||(12774028-12774244)
chr2 (18-116)||(40448001-40448099)
chr2 (23-237)||(35670383-35670604)
chr2 (121-274)||(18292431-18292582)
chr2 (121-237)||(28266848-28266964)
chr2 (155-241)||(29270993-29271079)
chr2 (459-525)||(32735391-32735457)
chr2 (34-110)||(36731835-36731911)
chr2 (121-274)||(40447804-40447950)
chr2 (34-87)||(41339855-41339908)
chr2 (125-200)||(40729168-40729242)
chr2 (121-200)||(41339990-41340068)
chr2 (34-116)||(40729032-40729113)
chr2 (34-112)||(44789030-44789107)
chr2 (220-273)||(12774190-12774243)
chr2 (204-273)||(44788932-44789000)
chr2 (185-229)||(44788866-44788910)
chr2 (117-173)||(44789002-44789057)
chr2 (451-521)||(29270722-29270792)
chr2 (124-170)||(34397559-34397604)
chr2 (220-274)||(36731989-36732043)
chr2 (220-273)||(35670550-35670603)
[»] scaffold0041 (1 HSPs)
scaffold0041 (19-200)||(32921-33100)
[»] scaffold1838 (1 HSPs)
scaffold1838 (410-513)||(271-374)
[»] scaffold0013 (2 HSPs)
scaffold0013 (33-173)||(242648-242783)
scaffold0013 (188-241)||(242883-242936)


Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 121 - 525
Target Start/End: Complemental strand, 537289 - 536899
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    ||||||||||||||||||||||||||||||||| | |||| || |||||||||| ||| |||| ||||||||| |||||||| |||||||||||||||||    
T  537289 cccgccactaaggcaccacacagatgcatatgcca-tgcacgaacatgaaaatgcacactaaaacccgccactaaggcacaataatgcaatatgatgtta 537191  T
Q  221 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacat 320  Q
    ||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  537190 tccc-------------cacaaagaaatatattattaacccgccactaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacat 537104  T
Q  321 ggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaatgtcattc 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  537103 ggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaatgccattc 537004  T
Q  421 cacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttt 520  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537003 cacataacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttt 536904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 34 - 343
Target Start/End: Original strand, 4557610 - 4557919
Alignment:
Q  34 caatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataataacccgccactaagg 133  Q
    ||||||||| ||| | || ||||||||||||| || ||||||| ||| |||||| |||||||||||||||||||||||||||||   ||||||||  |||    
T  4557610 caatgcaattatgcgtaagatgcatgctcttagattctacatggtccagatataacccgccacacaggcaccacacagaaataa---cccgccacacagg 4557706  T
Q  134 caccacacagatgcatatgctaatgcatgatcatgaa-aatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgttatcccgccactaa 232  Q
    ||||||| ||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||    
T  4557707 caccacagagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaacaatgcaatatgatattatcgcgccactaa 4557806  T
Q  233 ggcaccacaaagaaatatattatta--acccgccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacatggaccaaact 330  Q
    ||||||||| |||||||||||||||  ||||||||||||||||| ||||||  |||| ||| | || |||||||| ||||||||||||||| |||||| |    
T  4557807 ggcaccacacagaaatatattattaatacccgccactaaggcaacctcataagcaaacacaatcaggtattaacatatcatcatccacatgaaccaaaat 4557906  T
Q  331 gaaatattttcat 343  Q
    |||||||||||||    
T  4557907 gaaatattttcat 4557919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 537437 - 537340
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537437 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttatatactacatgatccggatatatcccgccacacaggcaccacacagaaata 537340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 334 - 521
Target Start/End: Original strand, 4557935 - 4558133
Alignment:
Q  334 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaa--catatatg--------aatagaaaaaatgtcattcca 422  Q
    |||||||||||| |||||||||||| |||| || |||||||||||  ||||||||||||||  ||||||||        |||| || ||| ||||||| |    
T  4557935 atattttcatttctttagtttatcaacaaaatccaacacttctttctcaataccacaaaaaaacatatatgcatatcaaaataaaataaaagtcattcta 4558034  T
Q  423 cataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgtttt 521  Q
    | ||||||||| || || |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  4558035 cgtaacattattatacacacattatataaaatatgattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagttttttt 4558133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 449 - 525
Target Start/End: Complemental strand, 536891 - 536815
Alignment:
Q  449 taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttc 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536891 taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttc 536815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 25101568 - 25101671
Alignment:
Q  69 actacatgatccggatatatcccgccacacaggcaccacacagaaataataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatg 168  Q
    |||| |||||||||||||| |||| |||||||||||||||||||   |||||||||||||  ||||||||||||||||||||| |  |||||||||||||    
T  25101568 actatatgatccggatataacccgtcacacaggcaccacacaga---aataacccgccacacaggcaccacacagatgcatatac-catgcatgatcatg 25101663  T
Q  169 aaaatgaa 176  Q
    ||||||||    
T  25101664 aaaatgaa 25101671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 25160661 - 25160764
Alignment:
Q  69 actacatgatccggatatatcccgccacacaggcaccacacagaaataataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatg 168  Q
    |||| |||||||||||||| |||| |||||||||||||||||||   |||||||||||||  ||||||||||||||||||||| |  |||||||||||||    
T  25160661 actatatgatccggatataacccgtcacacaggcaccacacaga---aataacccgccacacaggcaccacacagatgcatatac-catgcatgatcatg 25160756  T
Q  169 aaaatgaa 176  Q
    ||||||||    
T  25160757 aaaatgaa 25160764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 42861942 - 42861880
Alignment:
Q  38 gcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacag 100  Q
    ||||| ||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  42861942 gcaattatgtgtaaaatgcatgctcttaaatactacatgatctggatataacccgccacacag 42861880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 6309184 - 6309116
Alignment:
Q  204 aatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggca 273  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||||| || ||||||||||||||||||    
T  6309184 aatgcaatatgatattaacccgccactaaggcaccacacag-aatataatagtaacccgccactaaggca 6309116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 104753 - 104702
Alignment:
Q  122 ccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaat 173  Q
    |||||| |||||||||||| |||||||||||||||| |||||||||||||||    
T  104753 ccgccattaaggcaccacagagatgcatatgctaatacatgatcatgaaaat 104702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 274
Target Start/End: Complemental strand, 30910267 - 30910117
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaaca-atgcaatatgatgtt 219  Q
    ||||| ||||||  ||||||||||||||||||| | |||||||||||| ||||| | | ||||||| |||||| |||||| ||| ||  ||||| ||  |    
T  30910267 cccgctactaagagaccacacagatgcatatgcca-tgcatgatcatggaaatgcagactaaatcc-gccactaaggcaccacacat--aatataattat 30910172  T
Q  220 atcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaa 274  Q
    | ||||||||| ||||||||| |||||||||  |||||||  |||||||||||||    
T  30910171 aacccgccacttaggcaccactaagaaatatgatattaacttgccactaaggcaa 30910117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 121 - 274
Target Start/End: Complemental strand, 38001449 - 38001301
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    |||||||||| | ||||||||||||||||||| | ||||  ||||||||||||| | |||||| ||||||||| || ||| |||  | ||||| ||  ||    
T  38001449 cccgccacta-gacaccacacagatgcatatg-tcatgc--gatcatgaaaatgcagattaaaacccgccactaagacaccacacag-aatataattata 38001355  T
Q  221 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaa 274  Q
     | ||||||||| ||||||||  || ||||| ||||||||||||||||||||||    
T  38001354 actcgccactaaagcaccacacggatatataatattaacccgccactaaggcaa 38001301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 42861869 - 42861769
Alignment:
Q  136 ccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgttatcccgccactaaggc 235  Q
    ||||||||||||||||||| ||||||||||||||||||| |   | ||||||||||| ||||||| |||| | | ||| |  ||| ||||||||||||||    
T  42861869 ccacacagatgcatatgct-atgcatgatcatgaaaatggatcatgaatcccgccacataggcaccacaaagaattataagtttaacccgccactaaggc 42861771  T
Q  236 ac 237  Q
    ||    
T  42861770 ac 42861769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 6309272 - 6309214
Alignment:
Q  53 atgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacaga 112  Q
    ||||||||||||| | |||| |||||||||||||| |||||||||||| |||||||||||    
T  6309272 atgcatgctcttata-actatatgatccggatataacccgccacacagacaccacacaga 6309214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 40691343 - 40691266
Alignment:
Q  122 ccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcac 200  Q
    |||||| |||||||||||||||||||||||||   |||||||||||||||||| | | |||| |||| |||| ||||||    
T  40691343 ccgccaataaggcaccacacagatgcatatgc-cttgcatgatcatgaaaatgcagactaaaacccgtcactaaggcac 40691266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 40691476 - 40691395
Alignment:
Q  34 caatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||| ||| | || ||||||||||||| | |||| |||||||||||||| |  | |||||||||||||||||||||||    
T  40691476 caatgcaattatgcgtaagatgcatgctcttata-actatatgatccggatataacatgtcacacaggcaccacacagaaata 40691395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 6309241 - 6309186
Alignment:
Q  117 ataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaat 173  Q
    ||||||||||||  || ||||||||||||||||||||  ||||||||||||||||||    
T  6309241 ataacccgccacacagacaccacacagatgcatatgc-catgcatgatcatgaaaat 6309186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 6309049 - 6308999
Alignment:
Q  197 gcacaacaatgcaatatgatgttatcccgccactaaggcaccacaaagaaa 247  Q
    |||||||||||||||||||| ||  |||||||| ||||||||||| |||||    
T  6309049 gcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 6308999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 6309166 - 6309107
Alignment:
Q  89 cccgccacacaggcaccacacagaa----ataataacccgccactaaggcaccacacaga 144  Q
    ||||||||  |||||||||||||||    ||| |||||||||||||||||||||||||||    
T  6309166 cccgccactaaggcaccacacagaatataatagtaacccgccactaaggcaccacacaga 6309107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 42861823 - 42861770
Alignment:
Q  220 atcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggca 273  Q
    ||||||||||  ||||||||||||||| ||||   |||||||||||||||||||    
T  42861823 atcccgccacataggcaccacaaagaattataagtttaacccgccactaaggca 42861770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 6309130 - 6309083
Alignment:
Q  222 cccgccactaaggcaccacaaagaaatatattattaacccgccactaag 270  Q
    |||||||||||||||||||| || |||||| || |||||||||||||||    
T  6309130 cccgccactaaggcaccacacag-aatataatagtaacccgccactaag 6309083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 121 - 525
Target Start/End: Original strand, 15873712 - 15874102
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    ||||||||||||||||||||||||||||||||| | |||| || |||||||||| ||| |||| ||||||||| |||||||| |||||||||||||||||    
T  15873712 cccgccactaaggcaccacacagatgcatatgcca-tgcacgaacatgaaaatgcacactaaaacccgccactaaggcacaataatgcaatatgatgtta 15873810  T
Q  221 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacat 320  Q
    ||||             ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15873811 tccc-------------cacaaagaaatatattattaacccgccacgaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacat 15873897  T
Q  321 ggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaatgtcattc 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15873898 ggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaatgccattc 15873997  T
Q  421 cacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttt 520  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873998 cacaaaacattatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttt 15874097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 22078244 - 22077977
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataat 118  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||     
T  22078244 ataacagacctaatgcaatgcaatgatgtgtaaaatacatgctcttaaatactatatgatccggatatatcccgccacacaggcaccacacataaataac 22078145  T
Q  119 aacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgt 218  Q
    |   ||||||  |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  22078144 a---cgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaatcccgccacttaggcacaacaatgcaatatgatgt 22078048  T
Q  219 tatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaata 289  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||| ||||||    
T  22078047 tatcccgccactaaggcaccacaaagagatatattattaacccgccactaaggcaaatgcatagtcaaata 22077977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 21491085 - 21491353
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataat 118  Q
    |||||||||||||||||||||||| ||||| ||| |||||||| ||| || |||||||||||||| ||| |||||||||||||||||||||||||||||     
T  21491085 ataacagacccaatgcaatgcaattatgtgtaaattgcatgcttttagattctacatgatccggaaataacccgccacacaggcaccacacagaaataac 21491184  T
Q  119 aacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaa-aatgaacattaaatcccgccacttaggcacaacaatgcaatatgatg 217  Q
    |   ||||||  |||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||     
T  21491185 a---cgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaacaatgcaatatgata 21491281  T
Q  218 ttatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaata 289  Q
    || ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||  ||||| ||||||    
T  21491282 ttctcccgccactaaggcaccacacagaaatatattattaacccaccactaaggcaaatgcatagtcaaata 21491353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 18366919 - 18367173
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataat 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| ||||||||||| ||||||||||||   |||    
T  18366919 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttagattctacatgatccggatataacccgccacacatgcaccacacaga---aat 18367015  T
Q  119 aacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaa-aatgaacattaaatcccgccacttaggcacaacaatgcaatatgatg 217  Q
    ||||| ||||  | |||||||||| || ||||||||||||| |||||||||| |||||| ||||||||| |||||||||| ||||||||||||||||||     
T  18367016 aacccaccacccatgcaccacacaaatacatatgctaatgcgtgatcatgaacaatgaagattaaatccagccacttagggacaacaatgcaatatgata 18367115  T
Q  218 ttatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaa 275  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||| ||||| ||||    
T  18367116 ttatcctgccactaaggcaccacacagaaatctattattaacccgcccctaagacaaa 18367173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 48653439 - 48653649
Alignment:
Q  23 cagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataataacc 122  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||   |||||||    
T  48653439 cagacccaatgcaatgcaattatgtgtaaaatgcaagctcttaaatactacatgatccggatataacccgccacacaggcaccgcacaga---aataacc 48653535  T
Q  123 cgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgttatc 222  Q
    ||||||  || ||||||||||||||||||| | ||||||||||||||||||| |   | ||||||||||||||||||| |||| | | ||| |  ||| |    
T  48653536 cgccacacagacaccacacagatgcatatg-ttatgcatgatcatgaaaatggatcatgaatcccgccacttaggcaccacaaagaattataagtttaac 48653634  T
Q  223 ccgccactaaggcac 237  Q
    |||||||||||||||    
T  48653635 ccgccactaaggcac 48653649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 334 - 523
Target Start/End: Original strand, 21491459 - 21491659
Alignment:
Q  334 atattttcatttatttagtttatcagcaaagtctaacacttctttac-aataccacaaaaa---catatatg--------aatagaaaaaatgtcattcc 421  Q
    |||||||||||| |||||||||||| |||| || ||||||||||| | |||||||||||||   ||||||||        |||| || |||||||||||     
T  21491459 atattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaaaacatatatgcatatcaaaataaaataaatgtcattct 21491558  T
Q  422 acataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgtttt 521  Q
    |||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  21491559 acataacatttt-atgcacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagttttttt 21491657  T
Q  522 gt 523  Q
    ||    
T  21491658 gt 21491659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 10288379 - 10288477
Alignment:
Q  18 aataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10288379 aataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatatatcccgccacacaggcaccacacagaaata 10288477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 11035972 - 11036210
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggat---atatcccgccacacaggca-ccacacagaa- 113  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| ||     ||   |  |||||||||  ||||| ||||||||||     
T  11035972 ataacagacccaatgcaatgcaatgttgtgtaaaatgcatgctcttagatactaca-gagtataattgcaattcccgccactaaggcatccacacagaat 11036070  T
Q  114 ataat---aa--cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgc 208  Q
    |||||   ||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  11036071 ataattgcaattcccgccactaaggcaccacagagatgcatatgctaatgcatgatcatgaaaatgaagactaaatcccgccacttaggcacaacaatgc 11036170  T
Q  209 aatatgatgttatcccgccactaaggcaccacaaagaaata 249  Q
    |||||||| ||  | |||||| ||||||||||| |||||||    
T  11036171 aatatgatatttactcgccac-aaggcaccacacagaaata 11036210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 15873564 - 15873661
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15873564 ataacagacccaatgcaatgcaatgatatgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacggaaata 15873661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 410 - 521
Target Start/End: Complemental strand, 22077831 - 22077720
Alignment:
Q  410 aaatgtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat 509  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||| |||| ||||    
T  22077831 aaatgtcattctacataacattatcatacacacatcatataaaatataattaaactaataactttttgaaatggttaaattttaccatataaatttatat 22077732  T
Q  510 tttagttgtttt 521  Q
    ||||||||||||    
T  22077731 tttagttgtttt 22077720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 9993939 - 9993756
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggca-ccacacaga----a 113  Q
    |||||||||||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||||| | ||||||||||| | | ||||| | |    |    
T  9993939 ataacagacccaatgcaatgcaatgccgtgtaaaatgcatgcttttaaatactacatgatccggataaaacccgccacacatgtatccacaaaaaatata 9993840  T
Q  114 ataataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggc 198  Q
    || |||||||| |||  |||||||||| |  |||||||||  ||||||||| |||| |||||| | |||||||||||||||||||    
T  9993839 attataacccgtcacacaggcaccacaaacgtgcatatgc-catgcatgataatgataatgaaaactaaatcccgccacttaggc 9993756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 18367412 - 18367476
Alignment:
Q  449 taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18367412 taaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatatttta 18367476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 402 - 513
Target Start/End: Complemental strand, 48576538 - 48576426
Alignment:
Q  402 aatagaaaaaatgtcattccacataacattatcatgcagacatcatataaaatataatt-aaactaataacttttataaaaggttaaattttaccatatg 500  Q
    ||||||| |||||||||||  ||| |||||||||| || ||||||||||| |||||||| |||||||||||||| |||| |  ||||||||||||||||     
T  48576538 aatagaataaatgtcattctgcatcacattatcatacacacatcatataatatataattaaaactaataactttaataagatattaaattttaccatata 48576439  T
Q  501 aattcatatttta 513  Q
    |||||||||||||    
T  48576438 aattcatatttta 48576426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 21491358 - 21491443
Alignment:
Q  258 acccgccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacatggaccaaactgaaatattttcat 343  Q
    ||||||||||||||||| ||||||  |||| ||| | ||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  21491358 acccgccactaaggcaacctcataagcaaacacaataagatattaacacatcatcatccacatgaaccaaaatgaaatattttcat 21491443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 10288528 - 10288606
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcac 200  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||| | | |||| ||||||||| ||||||    
T  10288528 cccgccactaaggcaccacacagatgcatatgc-catgcatgatcatgaaaatgcaaactaaaacccgccactaaggcac 10288606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 9993702 - 9993633
Alignment:
Q  180 taaatcccgccacttaggcacaacaatgcaatatgatgttatcccgccactaaggcaccacaaagaaata 249  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||| |||| ||||||||||| |||||||    
T  9993702 taaatcccgccacttaggcacaacaatgcaatatgatatttacccaccacaaaggcaccacacagaaata 9993633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 125 - 274
Target Start/End: Original strand, 12911434 - 12911581
Alignment:
Q  125 ccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgttatccc 224  Q
    |||||||||||||||||||||||||||||  || |||||| ||||||||| | | |||| ||||||||| ||| || |||  | ||||| ||  || |||    
T  12911434 ccactaaggcaccacacagatgcatatgc-catacatgattatgaaaatgcagactaaaacccgccactaaggtaccacacag-aatataattataaccc 12911531  T
Q  225 gccactaaggcaccacaaagaaatatattattaacccgccactaaggcaa 274  Q
    |||||| ||||||||| |||||||||  |||||||| | |||||||||||    
T  12911532 gccacttaggcaccactaagaaatatgatattaacctgtcactaaggcaa 12911581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 40106279 - 40106201
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcac 200  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||| | | ||||  |||||||| ||||||    
T  40106279 cccgccactaaggcaccacacagatgcatatgc-catgcatgatcatgaaaatgcagactaaaatccgccactaaggcac 40106201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 18367192 - 18367274
Alignment:
Q  258 acccgccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacatggaccaaactgaaatatttt 340  Q
    ||||||||||||||||| ||||||  |||| ||| | || |||||||||||||||||||| ||| |||||| |||||||||||    
T  18367192 acccgccactaaggcaacctcataaccaaacacaatcaggtattaacacatcatcatccatatgaaccaaaatgaaatatttt 18367274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 49169964 - 49170092
Alignment:
Q  53 atgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaat--------aataacccgccactaaggca-ccacacag 143  Q
    ||||||||||||| | |||| |||||||||||||| ||||||||||| ||||||||||  |||        |||  || |||||||||||| ||||||||    
T  49169964 atgcatgctcttata-actatatgatccggatataacccgccacacaagcaccacacattaatataattgcaattcccggccactaaggcatccacacag 49170062  T
Q  144 atgcatatgctaatgcatgatcatgaaaatg 174  Q
    ||||||||||  |||||||||||||||||||    
T  49170063 atgcatatgc-catgcatgatcatgaaaatg 49170092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 12196433 - 12196547
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    |||||||||||||||||||||||||| |||||| | || ||||||||||||||| | | ||||  |||||||| |||||| |||  |  |||| || |||    
T  12196433 cccgccactaaggcaccacacagatgaatatgcca-tgtatgatcatgaaaatgcagactaaagtccgccactaaggcaccacacagatatataatatta 12196531  T
Q  221 tcccgccactaaggca 236  Q
     ||| |||||||||||    
T  12196532 acccaccactaaggca 12196547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 12196497 - 12196548
Alignment:
Q  223 ccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaa 274  Q
    ||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||    
T  12196497 ccgccactaaggcaccacacagatatataatattaacccaccactaaggcaa 12196548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 48653595 - 48653648
Alignment:
Q  220 atcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggca 273  Q
    ||||||||||| ||||||||||||||| ||||   |||||||||||||||||||    
T  48653595 atcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggca 48653648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 18367293 - 18367363
Alignment:
Q  334 atattttcatttatttagtttatcagcaaagtctaacacttcttt-acaataccac--aaaaacatatatg 401  Q
    |||||||||||| |||||||||||| |||| || |||||||||||  |||||||||  |||||||||||||    
T  18367293 atattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaaacatatatg 18367363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 121 - 525
Target Start/End: Original strand, 5004457 - 5004885
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||| | | |||| ||||||||| |||||||| |||||||||||||||||    
T  5004457 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgtta 5004555  T
Q  221 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5004556 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaatacagtaagatattaacacatcatcatccacat 5004655  T
Q  321 ggaccaaactgaaa-----------------tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaa 403  Q
    ||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004656 ggaccaaactgaaatattttcgtaaaactcgtattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaa 5004755  T
Q  404 tagaaa--------aaatgtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttacc 495  Q
    ||||||        ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5004756 tagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaatttcacc 5004855  T
Q  496 atatgaattcatattttagttgttttgttc 525  Q
    |||| |||||||||||||||||||||||||    
T  5004856 atataaattcatattttagttgttttgttc 5004885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 121 - 525
Target Start/End: Original strand, 46404338 - 46404727
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    ||||||||||||||||||||||||||||||||| | ||||  | |||||||||| ||| |||| ||||||||| |||||||| |||||||||||||||||    
T  46404338 cccgccactaaggcaccacacagatgcatatgcca-tgcacaaacatgaaaatgcacactaaaacccgccactaaggcacaataatgcaatatgatgtta 46404436  T
Q  221 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacat 320  Q
    ||||             ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46404437 tccc-------------cacaaagaaatatattattaacccgccacgaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacat 46404523  T
Q  321 ggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaatgtcattc 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  46404524 ggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatag-aaaaatgccattc 46404622  T
Q  421 cacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttt 520  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404623 cacaaaacattatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttt 46404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 11937478 - 11937735
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataat 118  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||||| || |||||||||||||||||| ||||||||||||               |||    
T  11937478 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgttcttatattctacatgatccggatataacccgccacacaga--------------aat 11937563  T
Q  119 aacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaa-aatgaacattaaatcccgccacttaggcacaacaatgcaatatgatg 217  Q
    ||||||||||  |||||||||||| |||||||||||||||||||||||| || |||||| | |||||||  ||||||||||||||||||||||||||||     
T  11937564 aacccgccacacaggcaccacacaaatgcatatgctaatgcatgatcataaacaatgaaaactaaatccaaccacttaggcacaacaatgcaatatgata 11937663  T
Q  218 ttatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaata 289  Q
    |||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||  ||||| ||||||    
T  11937664 ttatcccgccactaaggcaccacacagaaatatattatgaacctgccactaaggcaaatgcatagtcaaata 11937735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 334 - 525
Target Start/End: Complemental strand, 16975515 - 16975339
Alignment:
Q  334 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaaatgtcattccacataacatta 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||                | |||||||||||||| ||||    
T  16975515 atattttcatttatttagtttatcagcaaagtctaacacttctttaacaataccacaaaaaca----------------acgtcattccacataaaatta 16975432  T
Q  433 tcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttc 525  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16975431 tcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttc 16975339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 121 - 281
Target Start/End: Complemental strand, 16975789 - 16975629
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatccc-gccacttaggcacaacaatgcaatatgatgtt 219  Q
    |||||||||| |||||||||||||||||||||| | || ||||||||||||||| | | |||| ||| ||||||||||||||| ||||||||||||||||    
T  16975789 cccgccactatggcaccacacagatgcatatgcca-tggatgatcatgaaaatgcagactaaaaccccgccacttaggcacaataatgcaatatgatgtt 16975691  T
Q  220 atcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcata 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16975690 atcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaacgcata 16975629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 7336283 - 7336380
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7336283 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttagatactacatgatccggatatatcccgccacacaggcaccacacagaaata 7336380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 46404190 - 46404287
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404190 ataacagacccaatgcaatgcaatgatatgcaaaacgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 46404287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 16975937 - 16975840
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  16975937 ataatagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttaaatagtacatgatccggatataacccgccacacaggcaccacacagaaata 16975840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 9104654 - 9104522
Alignment:
Q  117 ataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgat 216  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||    
T  9104654 ataacccaccacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaatcacgccacttaggcacaacaaagcaatatgat 9104555  T
Q  217 gttatcccgccactaaggcaccacaaagaaata 249  Q
     ||  || ||||| ||||||||||| |||||||    
T  9104554 atttacctgccacaaaggcaccacacagaaata 9104522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 5004325 - 5004401
Alignment:
Q  24 agacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5004325 agacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatataacccgccacacag 5004401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 9104705 - 9104627
Alignment:
Q  34 caatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacaga 112  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  9104705 caatgcaatgatgtgtaaaatgcatgctcttaaatactacatgatccggatataacccaccacacaggcaccacacaga 9104627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 441 - 523
Target Start/End: Original strand, 11967971 - 11968053
Alignment:
Q  441 acatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgt 523  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  11967971 acatcgtataaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagattttttgt 11968053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 16975616 - 16975531
Alignment:
Q  258 acccgccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacatggaccaaactgaaatattttcat 343  Q
    ||||||||||||||||||||||||| |||||| ||| | ||||||||||||||||||||||||| |||||||||||||||||||||    
T  16975616 acccgccactaaggcaaactcataggcaaatatagtcacatattaacacatcatcatccacatgaaccaaactgaaatattttcat 16975531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 127 - 252
Target Start/End: Complemental strand, 8731269 - 8731144
Alignment:
Q  127 actaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgttatcccgc 226  Q
    |||||||||||||| |||||  |||||||||||||||||||||||||||| | ||||| || |||||||  ||  |||| ||||||||||  || |||||    
T  8731269 actaaggcaccacatagatgtttatgctaatgcatgatcatgaaaatgaagactaaattccaccacttacacatcacaaagcaatatgatactaacccgc 8731170  T
Q  227 cactaaggcaccacaaagaaatatat 252  Q
    | ||||||||||||||| || |||||    
T  8731169 ccctaaggcaccacaaataattatat 8731144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 127 - 252
Target Start/End: Complemental strand, 9083156 - 9083031
Alignment:
Q  127 actaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgttatcccgc 226  Q
    |||||||||||||| |||||  |||||||||||||||||||||||||||| | ||||| || |||||||  ||  |||| ||||||||||  || |||||    
T  9083156 actaaggcaccacatagatgtttatgctaatgcatgatcatgaaaatgaagactaaattccaccacttacacatcacaaagcaatatgatactaacccgc 9083057  T
Q  227 cactaaggcaccacaaagaaatatat 252  Q
    | ||||||||||||||| || |||||    
T  9083056 ccctaaggcaccacaaataattatat 9083031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 17542329 - 17542444
Alignment:
Q  53 atgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataataacccgccactaaggcaccacacagatgcatatg 152  Q
    ||||||||||||| | |||  ||||||||||||||  |||||||||||||||||||||||   |||||||||||||  ||||||||||||||| ||||||    
T  17542329 atgcatgctcttata-actgtatgatccggatataaaccgccacacaggcaccacacaga---aataacccgccacacaggcaccacacagatacatatg 17542424  T
Q  153 ctaatgcatgatcatgaaaat 173  Q
    |  ||||||||||| ||||||    
T  17542425 c-gatgcatgatcacgaaaat 17542444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 7336431 - 7336509
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcac 200  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||| | | |||| ||||||||| ||||||    
T  7336431 cccgccactaaggcaccacacagatgcatatgc-catgcatgatcatgaaaatgcaaactaaaacccgccactaaggcac 7336509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 11937744 - 11937825
Alignment:
Q  262 gccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacatggaccaaactgaaatattttcat 343  Q
    ||||||||||||| ||||||  |||| ||| | |  |||||||||||||||||||||||| |||||| | ||||||||||||    
T  11937744 gccactaaggcaacctcataagcaaacacaatcatgtattaacacatcatcatccacatgaaccaaaataaaatattttcat 11937825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 43277783 - 43277834
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaat 173  Q
    |||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  43277783 cccgccactaaggcaccacacagatgcatatg-tcatgtatgatcatgaaaat 43277834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 17542446 - 17542508
Alignment:
Q  204 aatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgccact 267  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||||| || ||||||||||||    
T  17542446 aatgcaatatgatattaacccgccactaaggcaccacacag-aatataatagtaacccgccact 17542508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 17542500 - 17542562
Alignment:
Q  185 cccgccacttaggcacaacaatgcaatatgatgttatcccgccactaaggcaccacaaagaaa 247  Q
    |||||||||||| ||||||||||||||||||| ||  || ||||| ||||||||||| |||||    
T  17542500 cccgccacttagacacaacaatgcaatatgatatttacctgccacaaaggcaccacacagaaa 17542562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 495
Target Start/End: Complemental strand, 8730966 - 8730913
Alignment:
Q  443 atcatataaaatataatta-aactaataacttttataaaaggttaaattttacc 495  Q
    ||||||||||| ||||| | || |||||||||||||||||| ||||||||||||    
T  8730966 atcatataaaacataatgagaattaataacttttataaaagattaaattttacc 8730913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 495
Target Start/End: Complemental strand, 9082853 - 9082800
Alignment:
Q  443 atcatataaaatataatta-aactaataacttttataaaaggttaaattttacc 495  Q
    ||||||||||| ||||| | || |||||||||||||||||| ||||||||||||    
T  9082853 atcatataaaacataatgagaattaataacttttataaaagattaaattttacc 9082800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 180 - 525
Target Start/End: Complemental strand, 9279 - 8925
Alignment:
Q  180 taaatcccgccacttaggcacaacaatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactca 279  Q
    |||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9279 taaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactca 9180  T
Q  280 tagacaaatacagttagatattaacacatcatcatccacatggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttcttta 379  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9179 tagacaaatacagtcagatattaacacatcatcatccacatggaccaatctgaaatattttcatttatttagtttatcagcaaagtctaacacttcttta 9080  T
Q  380 caataccacaaaaacatatatgaatagaaa---------aaatgtcattccacataacattatcatgcagacatcatataaaatataattaaactaataa 470  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9079 caataccacaaaaacatatatgaatagaaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataa 8980  T
Q  471 cttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttc 525  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8979 ctgttataaaaggttaaattttaccatgtgaattcatattttagttgttttgttc 8925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 47 - 1
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctctta 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  47 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctctta 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 121 - 525
Target Start/End: Complemental strand, 34636656 - 34636272
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    ||||||||||||||||||||||||||||||||| | |||| || |||||||||| ||| |||| ||||||||| |||||||| |||||||||||||||||    
T  34636656 cccgccactaaggcaccacacagatgcatatgcca-tgcacgaacatgaaaatgcacactaaaacccgccactaaggcacaataatgcaatatgatgtta 34636558  T
Q  221 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacat 320  Q
    ||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34636557 tccc-------------cacaaagaaatatattattaacccgccactaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacat 34636471  T
Q  321 ggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaatgtcattc 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||| |    
T  34636470 ggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacactt------aataccacaaaaacatatatgaatagaaaaaatgtcatgc 34636377  T
Q  421 cacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttt 520  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636376 cacataacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttt 34636277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 32449855 - 32450122
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataat 118  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||      
T  32449855 ataacagactcaatccaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatatatcccgccacacaggcaccacacagaaata-- 32449952  T
Q  119 aacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgt 218  Q
     |||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32449953 -acccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagattaaatcccgccacttaggcacaacaatgcaatatgatgt 32450051  T
Q  219 tatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaata 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  32450052 tatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaatgcatagtcaaata 32450122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 121 - 436
Target Start/End: Original strand, 10751297 - 10751636
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||| | | |||| ||||||||| |||||||| |||||||||||||||||    
T  10751297 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgtta 10751395  T
Q  221 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacat 320  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10751396 tcccgccactaaggcaccacaaagaaatatattattaaccagccactaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacat 10751495  T
Q  321 ggaccaaactgaaa-----------------tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaa 403  Q
    ||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751496 ggaccaaactgaaatattttcgtaaaactcgtattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaa 10751595  T
Q  404 tagaaa--------aaatgtcattccacataacattatcat 436  Q
    ||||||        |||||||||||||||||||||||||||    
T  10751596 tagaaaaataaaataaatgtcattccacataacattatcat 10751636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 334 - 525
Target Start/End: Complemental strand, 25005429 - 25005229
Alignment:
Q  334 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaa--------atgtcattccaca 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        |||||||||||||    
T  25005429 atattttcatttatttagtttatcagcaaagtctaacacttctttaacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccaca 25005330  T
Q  425 taacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 524  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25005329 taaaattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcttattttagttgttttgtt 25005230  T
Q  525 c 525  Q
    |    
T  25005229 c 25005229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 334 - 525
Target Start/End: Original strand, 23260544 - 23260743
Alignment:
Q  334 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaa--------atgtcattccaca 424  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||        |||||||||||||    
T  23260544 atattttcatttatttagtttatcagcaaa-tctaacacttctttaacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccaca 23260642  T
Q  425 taacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 524  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23260643 taacattatcatacaaacatcatataaaatataattaaactaataacttttataaaaggctaaattttaccatatgaattcatattttagttgttttgtt 23260742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 334 - 525
Target Start/End: Original strand, 32450228 - 32450428
Alignment:
Q  334 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaa--------atgtcattccaca 424  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||        |||||||||||||    
T  32450228 atattttcatttatttagtttatcaacaaagtctaacacttctttaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccaca 32450327  T
Q  425 taacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 524  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  32450328 taacattatcatacacacatcatataaaatataattaaactaataacttttataaaaagttaaaatttaccatatgaattcatattttagttgttttgtt 32450427  T
Q  525 c 525  Q
    |    
T  32450428 c 32450428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 34636804 - 34636707
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34636804 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacataggcaccacacagaaata 34636707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 13773025 - 13773235
Alignment:
Q  23 cagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataataacc 122  Q
    |||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||  || ||||||| ||||||||||||| ||||   |    
T  13773025 cagatccaatgtaatgcaattatgtgtaaaatgcatgctcttaaatactacatgatccggatataatccaccacacaagcaccacacagaagtaat---c 13773121  T
Q  123 cgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgttatc 222  Q
    ||||||  |||||||||||||||| ||||||| ||||||||||||||||||| |   |  ||| |||||||||||||| |||| | | ||| |  ||| |    
T  13773122 cgccacacaggcaccacacagatgtatatgct-atgcatgatcatgaaaatggatcatggatctcgccacttaggcaccacaaagaattataagtttaac 13773220  T
Q  223 ccgccactaaggcac 237  Q
    |||||||||||||||    
T  13773221 ccgccactaaggcac 13773235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 121 - 259
Target Start/End: Original strand, 23260351 - 23260489
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatccc-gccacttaggcacaacaatgcaatatgatgtt 219  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||| | | |||| ||| | ||||||||||||| ||||||| ||||||||    
T  23260351 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaaccccgtcacttaggcacaataatgcaacatgatgtt 23260449  T
Q  220 atcccgccactaaggcaccacaaagaaatatattattaac 259  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  23260450 atcctgccactaaggcaccacaaaaaaatatattattaac 23260489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 10751164 - 10751246
Alignment:
Q  34 caatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751164 caatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 10751246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 136 - 266
Target Start/End: Original strand, 26182392 - 26182522
Alignment:
Q  136 ccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgttatcccgccactaaggc 235  Q
    |||||||||||||||   ||||||||||||||||||||||| | ||||||| |||||   ||||||||||||||||||||| ||||||||||||||||||    
T  26182392 ccacacagatgcatacattaatgcatgatcatgaaaatgaagactaaatcctgccacagtggcacaacaatgcaatatgatattatcccgccactaaggc 26182491  T
Q  236 accacaaagaaatatattattaacccgccac 266  Q
    || || |||||||||||||||||||||||||    
T  26182492 acgaccaagaaatatattattaacccgccac 26182522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 265 - 343
Target Start/End: Original strand, 32450134 - 32450212
Alignment:
Q  265 actaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacatggaccaaactgaaatattttcat 343  Q
    |||||| ||||||||||| |||||||||| |||||||||||||||||||| |||||| |||||| ||||||||||||||    
T  32450134 actaagacaaactcataggcaaatacagtcagatattaacacatcatcatgcacatgaaccaaaatgaaatattttcat 32450212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 20558109 - 20558043
Alignment:
Q  21 aacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatata 87  Q
    |||||||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||    
T  20558109 aacagacccaatgcaatgcaatgatgtataaaacacatgctcttaaatactacatgatccggatata 20558043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 24164403 - 24164335
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatata 87  Q
    |||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||    
T  24164403 ataacagaccaaatgcaatgcaattatgtgtaaaatacatgctcttaaatactacatgatccagatata 24164335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 24163416 - 24163272
Alignment:
Q  102 caccacacagaaataataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatg-aaaatgaacattaaatcccgccacttaggcac 200  Q
    |||||||||||||||||   | | ||||||| |||||||||||| ||||||||||||||| |||||| |||||||| | ||||||||||||||||  |||    
T  24163416 caccacacagaaataat---ctgtcactaagacaccacacagatacatatgctaatgcataatcatgaaaaatgaagactaaatcccgccacttaaacac 24163320  T
Q  201 aacaatgcaatatgatgttatcccgccactaaggc-accacaaagaaa 247  Q
     ||||   |||||||| ||| |||  ||||||| | ||||||||||||    
T  24163319 cacaaaataatatgatattaacccatcactaagacaaccacaaagaaa 24163272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 20555709 - 20555629
Alignment:
Q  157 tgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgttatcccgccactaaggcac 237  Q
    |||||||| |||| |||||| | |||||||| |||| ||| ||||||||||||||||||| ||||||||||||||| ||||    
T  20555709 tgcatgataatgataatgaaaactaaatcccaccacatagacacaacaatgcaatatgatattatcccgccactaaagcac 20555629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 23260483 - 23260528
Alignment:
Q  298 tattaacacatcatcatccacatggaccaaactgaaatattttcat 343  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  23260483 tattaacacatcatcatccacatgaaccaaactgaaatattttcat 23260528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 26182339 - 26182388
Alignment:
Q  69 actacatgatccggatatatcccgccacacaggcaccacacagaaataat 118  Q
    |||| |||||||||||||| ||| ||||| ||||||||||||||||||||    
T  26182339 actatatgatccggatataacccaccacataggcaccacacagaaataat 26182388  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 13773185 - 13773234
Alignment:
Q  224 cgccactaaggcaccacaaagaaatatattattaacccgccactaaggca 273  Q
    ||||||| ||||||||||||||| ||||   |||||||||||||||||||    
T  13773185 cgccacttaggcaccacaaagaattataagtttaacccgccactaaggca 13773234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 23260272 - 23260300
Alignment:
Q  88 tcccgccacacaggcaccacacagaaata 116  Q
    |||||||||||||||||||||||||||||    
T  23260272 tcccgccacacaggcaccacacagaaata 23260300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 121 - 453
Target Start/End: Original strand, 37666915 - 37667271
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||| | | ||||  |||||||| |||||||| |||||||||||||||||    
T  37666915 cccgccactaaggcaccacacagatgcatatgaca-tgcatgatcatgaaaatgcagactaaaatccgccactaaggcacaataatgcaatatgatgtta 37667013  T
Q  221 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacat 320  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  37667014 tcccgccactaaggcaccacaaagaaatatattattaacccgtcactaaggcaaactcatagacaaatacagtcagattttaacacatcatcatccacat 37667113  T
Q  321 ggaccaaactgaa-----------------atattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaa 403  Q
    |||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37667114 ggaccaaactgaaatattttcataaaactcatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaa 37667213  T
Q  404 tagaaa--------aaatgtcattccacataacattatcatgcagacatcatataaaa 453  Q
    ||||||        ||| ||||||||||||||||||||||| ||||||||||||||||    
T  37667214 tagaaaaataaaataaaagtcattccacataacattatcatacagacatcatataaaa 37667271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 35761646 - 35761909
Alignment:
Q  23 cagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataataacc 122  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  35761646 cagacccaatgcaatgcaatgatgtgtaaaatgtatgctcttagatactacatgatccggatatatcccgccacacaggcaccacacagaaata---acc 35761742  T
Q  123 cgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgttatc 222  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||    
T  35761743 cgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagattaaattccgccacttaggcacaacaatgcagtatgatgttatc 35761842  T
Q  223 ccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaata 289  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  35761843 ctgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaatgcatagtcaaata 35761909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 334 - 525
Target Start/End: Original strand, 35762015 - 35762217
Alignment:
Q  334 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaa--------atgtcattccaca 424  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||| |||||||||        |||||||||||||    
T  35762015 atattttcatttatttagtttatctacaaagtctaacacttcattaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccaca 35762114  T
Q  425 taacattatcatgcagacatcatataaaatataattaaactaataac--ttttataaaaggttaaattttaccatatgaattcatattttagttgttttg 522  Q
    |||||||||||| || ||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35762115 taacattatcatacacacatcatataaaatatagttaaactaataacttttttataaaaggttaaattttaccatataaattcatattttagttgttttg 35762214  T
Q  523 ttc 525  Q
    |||    
T  35762215 ttc 35762217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 117 - 289
Target Start/End: Original strand, 19198447 - 19198622
Alignment:
Q  117 ataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaat---at 213  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||||||||||   ||    
T  19198447 ataacccgccacacaggcaccacacagatgcatatgttaatgcatgatcataaaaatgaagattaaattccgccacttaggtacaacaatgcaatatgat 19198546  T
Q  214 gatgttatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaata 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  ||||| ||||||    
T  19198547 gatgttatcccgccactaaggcaccacaaagaaatatattattaacccgtcattaaggcaaatgcatagtcaaata 19198622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 30 - 174
Target Start/End: Original strand, 18472537 - 18472677
Alignment:
Q  30 aatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataataacccgccact 129  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||   ||||||||||||      
T  18472537 aatgcaatgcaattatgtgtaaaatgtatgctcttaaatactacatgatccggatataacccgccacataggcaccacacaga---aataacccgccata 18472633  T
Q  130 aaggcaccacacagatgcatatgctaatgcatgatcatgaaaatg 174  Q
     |||||||||||||||||||||||| |||||||||||||||||||    
T  18472634 caggcaccacacagatgcatatgct-atgcatgatcatgaaaatg 18472677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 43406955 - 43407053
Alignment:
Q  18 aataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43406955 aataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatatatcccgccacacaggcaccacacagaaata 43407053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 37666767 - 37666864
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37666767 ataacagacccaatgcagtgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatatatcccgccacacaggcaccacacagaaata 37666864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 410 - 521
Target Start/End: Original strand, 9537406 - 9537517
Alignment:
Q  410 aaatgtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat 509  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  9537406 aaatgtcattctacataacattatcatacaaacatcatataaaatataattaaactaataacttttataaaaggttaaattttacaatataaatttatat 9537505  T
Q  510 tttagttgtttt 521  Q
    |||| |||||||    
T  9537506 tttacttgtttt 9537517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 338726 - 338628
Alignment:
Q  18 aataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  338726 aataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttaggtactacatgatccggatataacccgccacacaggcaccacacagaaata 338628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 6836515 - 6836422
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacaga 112  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6836515 ataacagactcaatgcaatgcaatgatgtgtaaaatgcatgctcttaaatactacatgatccggatataacccgccacacaggcaccacacaga 6836422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 35761918 - 35761999
Alignment:
Q  262 gccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacatggaccaaactgaaatattttcat 343  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||||    
T  35761918 gccactaaggcaaactcataggcaaatacagtcaaatattaacacatcatcatccacatgaaccaaaatgaaatattttcat 35761999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 443 - 521
Target Start/End: Complemental strand, 16074879 - 16074800
Alignment:
Q  443 atcatataaaatataattaaa-ctaataacttttataaaaggttaaattttaccatatgaattcatattttagttgtttt 521  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||    
T  16074879 atcatataaaatataattaaatctaataacttttataaaagattaaattttaacatatgaattcatattttaattgtttt 16074800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 16075211 - 16075097
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    |||||||||||| |||||||||||||||| ||| | |||||||||||||||||| |   |||||||||||||| |||||| |||| | |||||||| |||    
T  16075211 cccgccactaagacaccacacagatgcatttgcca-tgcatgatcatgaaaatgcatcctaaatcccgccactcaggcaccacaaagtaatatgatatta 16075113  T
Q  221 tcccgccactaaggca 236  Q
     ||||||| |||||||    
T  16075112 acccgccattaaggca 16075097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 43407104 - 43407182
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcac 200  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||| | | |||| ||||||||| ||||||    
T  43407104 cccgccactaaggcaccacacagatgcatatgc-catgcatgatcatgaaaatgcaaactaaaacccgccactaaggcac 43407182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 28561890 - 28561778
Alignment:
Q  119 aacccgccactaaggcaccacacaga--tgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgat 216  Q
    |||| |||||||||||||||||||||  |||||||  | ||||||||||||||||||||| ||||||||||||||||||  ||| |||| | ||||||||    
T  28561890 aacctgccactaaggcaccacacagaaatgcatata-tcatgcatgatcatgaaaatgaaaattaaatcccgccacttaaacaccacaaagaaatatgat 28561792  T
Q  217 gttatcccgccact 230  Q
     ||| || ||||||    
T  28561791 attaacctgccact 28561778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 475 - 525
Target Start/End: Original strand, 37667265 - 37667315
Alignment:
Q  475 tataaaaggttaaattttaccatatgaattcatattttagttgttttgttc 525  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37667265 tataaaaggttaaattttatcatatgaattcatattttagttgttttgttc 37667315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 121 - 274
Target Start/End: Complemental strand, 338577 - 338431
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||||||| | | |||| ||||||||| |||||| || |   ||||| ||  ||    
T  338577 cccgccactaaggcaccacacagatgcatatg-acatgcatgatcatgaaaatgcaaactaaaacccgccactaaggcaccac-acaaaatataattata 338480  T
Q  221 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaa 274  Q
     ||||||| | ||||||||| ||||||     ||||||||||||||||||||||    
T  338479 acccgccagttaggcaccactaagaaa-----tattaacccgccactaaggcaa 338431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 9537128 - 9537206
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcac 200  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||||| | | |||| ||||||||| ||||||    
T  9537128 cccgccactaaggcaccacacaaatgcatatgc-catgcatgatcatgaaaatgtagactaaaacccgccactaaggcac 9537206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 6836308 - 6836246
Alignment:
Q  185 cccgccacttaggcacaacaatgcaatatgatgttatcccgccactaaggcaccacaaagaaa 247  Q
    |||||||||||||||||||||||||||||||| ||  |||||||| ||||||||||| |||||    
T  6836308 cccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacatagaaa 6836246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 25921953 - 25921874
Alignment:
Q  125 ccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaa 205  Q
    |||||||||||||||||||||||||||| | ||| ||||||||||||||| | |  |||||||| ||||||||||| ||||    
T  25921953 ccactaaggcaccacacagatgcatatg-tcatgtatgatcatgaaaatgtaaacaaaatcccgtcacttaggcaccacaa 25921874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 19198416 - 19198474
Alignment:
Q  53 atgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacaga 112  Q
    ||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||    
T  19198416 atgcatgctcttata-actatatgatccggatataacccgccacacaggcaccacacaga 19198474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 8422030 - 8421953
Alignment:
Q  122 ccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcac 200  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||||||||||| | | |||| |||||| || ||||||    
T  8422030 ccgccactaaggcaccacatagatgcatatgc-catgcatgatcatgaaaatgcagactaaaacccgccgctaaggcac 8421953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 26317677 - 26317615
Alignment:
Q  133 gcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccactta 195  Q
    |||| |||| |||| ||||||||||||||||||||||||||||| | ||||| ||||||||||    
T  26317677 gcacaacactgatgtatatgctaatgcatgatcatgaaaatgaagactaaattccgccactta 26317615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 33007388 - 33007440
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatg 174  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| |||||||||    
T  33007388 cccgccactaaagcaccacacagatgcatatgct-atgcatgattatgaaaatg 33007440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 16075150 - 16075096
Alignment:
Q  220 atcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaa 274  Q
    ||||||||||| ||||||||||||| |||||  ||||||||||||| ||||||||    
T  16075150 atcccgccactcaggcaccacaaagtaatatgatattaacccgccattaaggcaa 16075096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 36386378 - 36386423
Alignment:
Q  41 atgatgtgcaaaatgcatgctcttaaatactacatgatccggatat 86  Q
    ||||| || |||||||||||||||||||||||||||||| ||||||    
T  36386378 atgatctgtaaaatgcatgctcttaaatactacatgatctggatat 36386423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 6836449 - 6836394
Alignment:
Q  117 ataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaat 173  Q
    ||||||||||||  |||||||||||||||||||||||  ||||||||||| ||||||    
T  6836449 ataacccgccacacaggcaccacacagatgcatatgc-catgcatgatcaggaaaat 6836394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 24055824 - 24055858
Alignment:
Q  53 atgcatgctcttaaatactacatgatccggatata 87  Q
    |||||||||||||| ||||||||||||||||||||    
T  24055824 atgcatgctcttaattactacatgatccggatata 24055858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 24276062 - 24276028
Alignment:
Q  53 atgcatgctcttaaatactacatgatccggatata 87  Q
    |||||||||||||| ||||||||||||||||||||    
T  24276062 atgcatgctcttaattactacatgatccggatata 24276028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 4e-98; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 49499671 - 49499403
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataat 118  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||     
T  49499671 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaattctacatgatctggatataacccgccacacaggcaccacacagaaataa- 49499573  T
Q  119 aacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaa-aatgaacattaaatcccgccacttaggcacaacaatgcaatatgatg 217  Q
      ||||||||  |||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||| |||||||||||||     
T  49499572 --cccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaaaaatgcaatatgata 49499475  T
Q  218 ttatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaactcatagacaaata 289  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| ||||||    
T  49499474 tcatcccgccactaaggcaccacacagaaatatattattaacccgccactaaggcaaatgcatagtcaaata 49499403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 2761698 - 2761911
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataat 118  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||  |||||||||||||    |||    
T  2761698 ataacagacacaatgcaatgcaatcatgtgtaaaatgcatgctcttaaatactaaatgattcggatataacccgccactaaggcaccacacag---gaat 2761794  T
Q  119 aacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgt 218  Q
    ||||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||   |||||||| ||||||| |||| ||||   |||||||| |    
T  2761795 aaccctccactaaggcaccacacaaatgcatatgc-catgcatgatcatgaaaatgaatcctaaatcccaccacttaagcaccacaaaataatatgatat 2761893  T
Q  219 tatcccgccactaaggca 236  Q
     | ||| |||||||||||    
T  2761894 caacccaccactaaggca 2761911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 40459569 - 40459471
Alignment:
Q  18 aataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  40459569 aataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccgccacacagacaccacacagaaata 40459471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 410 - 521
Target Start/End: Original strand, 28969233 - 28969344
Alignment:
Q  410 aaatgtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat 509  Q
    ||||||||||| |||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||    
T  28969233 aaatgtcattctacataaaattatcatacacacatcatatagaatataattaaactaataacttttataaaatgttaaattttaccatataaattaatat 28969332  T
Q  510 tttagttgtttt 521  Q
    ||||||||||||    
T  28969333 tttagttgtttt 28969344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 334 - 531
Target Start/End: Complemental strand, 49499297 - 49499091
Alignment:
Q  334 atattttcatttatttagtttatcagcaaagtctaacacttctttac-aataccacaaaaa-catatatg--------aatagaaaaaatgtcattccac 423  Q
    |||||||||||| |||||||||||| |||| || ||||||||||| | ||||||||||||| ||||||||        |||| || ||||||||||| ||    
T  49499297 atattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaacatatatgcatatcaaaataaaataaatgtcattctac 49499198  T
Q  424 ataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgt 523  Q
     ||||||  | || || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||| |    
T  49499197 gtaacatctt-atacacacattatataaaatataattaaactaataatttttataaaaggttaaattttactatataaattcatattttagttttttttt 49499099  T
Q  524 tcatctca 531  Q
    || |||||    
T  49499098 tcttctca 49499091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 49499398 - 49499313
Alignment:
Q  258 acccgccactaaggcaaactcatagacaaatacagttagatattaacacatcatcatccacatggaccaaactgaaatattttcat 343  Q
    ||||||||||||||||| ||||||  |||| ||| |||| |||||||||||||||||||||||| |||||| ||||||||||||||    
T  49499398 acccgccactaaggcaacctcataagcaaacacaattaggtattaacacatcatcatccacatgaaccaaaatgaaatattttcat 49499313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 40459420 - 40459293
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||||||| |   |||| ||||||||| ||||||||| ||  ||||| ||  ||    
T  40459420 cccgccactaaggcaccacacagatgcatatg-acatgcatgatcatgaaaatgcaacctaaaacccgccactaaggcacaac-atagaatataattata 40459323  T
Q  221 tcccgccactaaggcaccacaaagaaatat 250  Q
     ||||||||| ||||||||| |||||||||    
T  40459322 acccgccacttaggcaccactaagaaatat 40459293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 55162774 - 55162712
Alignment:
Q  53 atgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  55162774 atgcatgctcttata-actacatgatccggatataacccgccacacaggcaccacacagaaata 55162712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 69690 - 69628
Alignment:
Q  185 cccgccacttaggcacaacaatgcaatatgatgttatcccgccactaaggcaccacaaagaaa 247  Q
    |||||||||||||||||||||||||||||||| ||  |||||||| ||||||||||| |||||    
T  69690 cccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaa 69628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 28968844 - 28968925
Alignment:
Q  34 caatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||| |||  ||| ||||||||||||| | |||| |||||||||||||| ||||||||||| ||||||||||||||||    
T  28968844 caatgcaattatgcacaagatgcatgctcttata-actatatgatccggatataacccgccacacatgcaccacacagaaata 28968925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 55162623 - 55162571
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatg 174  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  55162623 cccgccactaaggcaccacacagatgcatatgc-catgcatgatcatgaaaatg 55162571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 69868 - 69810
Alignment:
Q  53 atgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacaga 112  Q
    ||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||    
T  69868 atgcatgctcttata-actatatgatccggatataacccgccacacaggcaccacacaga 69810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 28968976 - 28969059
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgcta----atgcatgatcatgaaaatgaacattaaatcccgccacttaggcac 200  Q
    ||||||||||||||||||||||||||||||||| |    ||||||||||||||||||| | |||||| ||  ||||| ||||||    
T  28968976 cccgccactaaggcaccacacagatgcatatgccatgccatgcatgatcatgaaaatgcagattaaaacctaccactaaggcac 28969059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 69780 - 69712
Alignment:
Q  204 aatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggca 273  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||||| |  ||||||||||||||||||    
T  69780 aatgcaatatgatattaacccgccactaaggcaccacacag-aatataatcgtaacccgccactaaggca 69712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 42899892 - 42899960
Alignment:
Q  102 caccacacagaaataataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaat 173  Q
    |||||||||||||||||   |||||| ||| |||||||||||||||||||  ||||||||||| ||||||||    
T  42899892 caccacacagaaataat---ccgccattaaagcaccacacagatgcatatattaatgcatgattatgaaaat 42899960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 69837 - 69782
Alignment:
Q  117 ataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaat 173  Q
    ||||||||||||  |||||||||||||||||||||||  ||||||||||||||||||    
T  69837 ataacccgccacacaggcaccacacagatgcatatgc-catgcatgatcatgaaaat 69782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 13653002 - 13652928
Alignment:
Q  123 cgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatg-aacattaaatcccgccacttagg 197  Q
    |||||||||||||||||||| |||||||| |  ||||||||||||||||||| || | |||| |||||||||||||    
T  13653002 cgccactaaggcaccacacaaatgcatatac-catgcatgatcatgaaaatgcaagactaaaacccgccacttagg 13652928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 13661127 - 13661053
Alignment:
Q  123 cgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatg-aacattaaatcccgccacttagg 197  Q
    |||||||||||||||||||| |||||||| |  ||||||||||||||||||| || | |||| |||||||||||||    
T  13661127 cgccactaaggcaccacacaaatgcatatac-catgcatgatcatgaaaatgcaagactaaaacccgccacttagg 13661053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 41869157 - 41869076
Alignment:
Q  118 taacccgccactaaggcaccacac--agatgcatatgctaatg-catgatcatgaaaatgaacattaaatcccgccacttagg 197  Q
    ||||| ||||||||||||||||||  | |||||||||| |||| |||||| |||||||||||  ||||||||| |||||||||    
T  41869157 taaccagccactaaggcaccacacttatatgcatatgc-aatgtcatgatgatgaaaatgaaagttaaatcccaccacttagg 41869076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 69762 - 69703
Alignment:
Q  89 cccgccacacaggcaccacacagaa-ataat---aacccgccactaaggcaccacacaga 144  Q
    ||||||||  ||||||||||||||| |||||   ||||||||||||||||||||||||||    
T  69762 cccgccactaaggcaccacacagaatataatcgtaacccgccactaaggcaccacacaga 69703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 40841119 - 40841322
Alignment:
Q  23 cagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataataacc 122  Q
    ||||||||||||||||| || ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    |    
T  40841119 cagacccaatgcaatgcgattatgtgtaaaatgtatgctcttaaatactacatgatccggatataacccgccacacaggcaccacatagaaataag---c 40841215  T
Q  123 cgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgttatc 222  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || ||||||||||||||||||||||| ||  |    
T  40841216 cgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaatcccgcaacataggcacaacaatgcaatatgatatttac 40841315  T
Q  223 ccgccac 229  Q
    |||||||    
T  40841316 ccgccac 40841322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 22815930 - 22816064
Alignment:
Q  34 caatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataataacccgccactaagg 133  Q
    ||||||||| ||||| || ||||||||||||| | |||| ||||||| |||||| ||||||||||| ||||||||||||   |||||||||| ||  |||    
T  22815930 caatgcaattatgtgtaagatgcatgctcttata-actatatgatccagatataacccgccacacaagcaccacacaga---aataacccgctacacagg 22816025  T
Q  134 caccacacagatgcatatgctaatgcatgatcatgaaaat 173  Q
    |||| |||||||||||||||  ||||||||||||||||||    
T  22816026 caccgcacagatgcatatgc-catgcatgatcatgaaaat 22816064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 89 - 273
Target Start/End: Complemental strand, 44436620 - 44436442
Alignment:
Q  89 cccgccacacaggcaccacacagaaataataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccg 188  Q
    ||||||||||||||||||||||||   |||| ||||||||  ||||||||||||||||||||||| || ||||||||||||||||  | | |||| |||     
T  44436620 cccgccacacaggcaccacacaga---aatatcccgccacacaggcaccacacagatgcatatgccaa-gcatgatcatgaaaatagagactaaaaccca 44436525  T
Q  189 ccacttaggcacaacaatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggca 273  Q
    ||||| |||||| |||  | ||||| ||  || ||||| |||||||||||||| || |||||| |  |||||||| |||||||||    
T  44436524 ccactaaggcaccacacag-aatataattataacccgcaactaaggcaccacacag-aatataattataacccgcaactaaggca 44436442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 41958159 - 41958211
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatg 174  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  41958159 cccgccactaaggcaccacacagatgcatatgc-catgcatgatcatgaaaatg 41958211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 22635692 - 22635774
Alignment:
Q  90 ccgccacacaggcaccacacagaaataataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaa 176  Q
    |||||||||| |||||| ||||||||||   | ||||||  |||||||||||||||||||||||  |||||||||||||||||||||    
T  22635692 ccgccacacatgcaccatacagaaataa---ctcgccacacaggcaccacacagatgcatatgc-catgcatgatcatgaaaatgaa 22635774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 35840710 - 35840649
Alignment:
Q  188 gccacttaggcacaacaatgcaatatgatgttatcccgccactaaggcaccacaaagaaata 249  Q
    ||||||||||||||||||||||||||||| ||  |||||||| ||||||| ||| |||||||    
T  35840710 gccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcacgacacagaaata 35840649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 44436703 - 44436597
Alignment:
Q  34 caatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataataacccgccactaagg 133  Q
    ||||||||| ||| | || ||||||||||||| | |||  |||||||||||||| |||||||||||| |||||||    || |||||||||||||  |||    
T  44436703 caatgcaattatgcgtaagatgcatgctcttata-actgtatgatccggatataacccgccacacagacaccaca---taaaaataacccgccacacagg 44436608  T
Q  134 caccacacaga 144  Q
    |||||||||||    
T  44436607 caccacacaga 44436597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 3189092 - 3189148
Alignment:
Q  53 atgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacaca 110  Q
    |||||||||| |||| |||| |||||||||||||| ||||||||||| ||||||||||    
T  3189092 atgcatgctcctaaa-actaaatgatccggatataacccgccacacaagcaccacaca 3189148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 22635627 - 22635691
Alignment:
Q  53 atgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataat 118  Q
    |||||||||| |||| |||| |||||| ||||||| ||||||||||| |||||||| |||||||||    
T  22635627 atgcatgctcctaaa-actatatgatctggatataacccgccacacatgcaccacatagaaataat 22635691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 3189123 - 3189181
Alignment:
Q  117 ataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaa 176  Q
    ||||||||||||  | |||||||||| ||||||||| | |||||||||||||||||||||    
T  3189123 ataacccgccacacaagcaccacacaaatgcatatg-tcatgcatgatcatgaaaatgaa 3189181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 35840780 - 35840736
Alignment:
Q  156 atgcatgatcatgaaaatgaacattaaatcccgccacttaggcac 200  Q
    ||||||||| |||| |||||| | |||||||||||||||||||||    
T  35840780 atgcatgataatgataatgaaaactaaatcccgccacttaggcac 35840736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 9e-59; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 12774028 - 12774244
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataat 118  Q
    ||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||   || |||    
T  12774028 ataacagactcaatgcaatgcgattatgtgtaaaatgcatgctcttaaatactacatgatccagatataacccgccacacatgcaccacac---aaaaat 12774124  T
Q  119 aacccgccac--taaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgat 216  Q
    ||||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||   | ||||||||||||||||||| |||| |  |||||||    
T  12774125 aacccgccactataaggcaccacacagatgcatatgc-gatgcatgatcatgaaaatgaatcatgaatcccgccacttaggcaccacaaagagatatgat 12774223  T
Q  217 gttatcccgccactaaggcac 237  Q
     ||||||||||||||||||||    
T  12774224 attatcccgccactaaggcac 12774244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 40448099 - 40448001
Alignment:
Q  18 aataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40448099 aataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttaggtactacatgatccggatataacccgccacacaggcaccacacagaaata 40448001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 35670383 - 35670604
Alignment:
Q  23 cagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataa----- 117  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||  ||||| | ||||||||||||| |||||| ||||||         
T  35670383 cagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactacatgatccaaatataactcgccacacaggcatcacacataaataacccgc 35670482  T
Q  118 ---taacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatg 214  Q
         |  | ||||  || ||||||||||||||||||||| ||||||||||||||||||| |   | ||||||||||| ||||||| |||| | | |||     
T  35670483 cacacagacaccacacagacaccacacagatgcatatgct-atgcatgatcatgaaaatggatcatgaatcccgccacataggcaccacaaagaattata 35670581  T
Q  215 atgttatcccgccactaaggcac 237  Q
    |  ||| ||||||||||||||||    
T  35670582 agtttaacccgccactaaggcac 35670604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 121 - 274
Target Start/End: Original strand, 18292431 - 18292582
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||| | | |||| ||||||||| |||||| || |   ||||| ||  ||    
T  18292431 cccgccactaaggcaccacacagatgcatatgc-catgcatgatcatgaaaatgcagactaaaacccgccactaaggcaccac-acaaaatataattata 18292528  T
Q  221 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaa 274  Q
     ||||||||||||||||| || ||| ||||| ||||||||| ||||||||||||    
T  18292529 acccgccactaaggcaccccacagatatataatattaacccaccactaaggcaa 18292582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 28266848 - 28266964
Alignment:
Q  121 cccgccactaaggca-ccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtt 219  Q
    |||||||||||| || ||||| |||||||||||| | ||||||||||| |||||||| | |||||||||||||  |||||||||||||||||||||| ||    
T  28266848 cccgccactaagacatccacatagatgcatatgcca-tgcatgatcattaaaatgaagactaaatcccgccacacaggcacaacaatgcaatatgatatt 28266946  T
Q  220 atcccgccactaaggcac 237  Q
    || |||||||||||||||    
T  28266947 atgccgccactaaggcac 28266964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 29271079 - 29270993
Alignment:
Q  155 aatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgttatcccgccactaaggcaccaca 241  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||  ||| |||||||||| ||| ||| ||||||||||||||||    
T  29271079 aatgcatgatcatgaaaatgaaaattaaatcccgtcacttaggcaccccaaagcaatatgatattaacccaccactaaggcaccaca 29270993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 459 - 525
Target Start/End: Original strand, 32735391 - 32735457
Alignment:
Q  459 ttaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttc 525  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  32735391 ttaaactaatatcttttataaaaggttaaatttcaccatatgaatgcatattttagttgttttgttc 32735457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 36731835 - 36731911
Alignment:
Q  34 caatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacaca 110  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||| |||||| |||| |||||||||| ||||||    
T  36731835 caatgcaatgctgtgtaaaatgcatgctcttaaatactacatgatccagatataacccgtcacacaggcagcacaca 36731911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 121 - 274
Target Start/End: Complemental strand, 40447950 - 40447804
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcacaacaatgcaatatgatgtta 220  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||||||| | | |||| ||||||||| |||||| || |   ||||| ||  ||    
T  40447950 cccgccactaaggcaccacacagatgcatatg-acatgcatgatcatgaaaatgcaaactaaaacccgccactaaggcaccac-acaaaatataattata 40447853  T
Q  221 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaa 274  Q
     ||||||| | ||||||||| ||||||     ||||||||||||||||||||||    
T  40447852 acccgccagttaggcaccactaagaaa-----tattaacccgccactaaggcaa 40447804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 41339855 - 41339908
Alignment:
Q  34 caatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatata 87  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  41339855 caatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatata 41339908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 40729168 - 40729242
Alignment:
Q  125 ccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcac 200  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||| | | |||| ||||||||| ||||||    
T  40729168 ccactaaggcaccacacagatgcatatgc-catgcatgatcatgaaaatgcagactaaaacccgccactaaggcac 40729242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 41339990 - 41340068
Alignment:
Q  121 cccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcac 200  Q
    ||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||| | |||| ||||||||| ||||||    
T  41339990 cccgccactaaggcaccacacaggtgcatatgc-catgcatggtcatgaaaatgaagactaaaacccgccactaaggcac 41340068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 40729032 - 40729113
Alignment:
Q  34 caatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 116  Q
    ||||||||| ||| | || ||||||||||||| | |||| |||||||||||||| || ||||||||| |||||||||||||||    
T  40729032 caatgcaattatgcgtaagatgcatgctcttata-actatatgatccggatataacctgccacacagacaccacacagaaata 40729113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 44789107 - 44789030
Alignment:
Q  34 caatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacaga 112  Q
    ||||||||| ||| | || |||||||||| || | |||| |||||||||||||| ||||||||||||||||||||||||    
T  44789107 caatgcaattatgcgtaagatgcatgctcgtata-actatatgatccggatataacccgccacacaggcaccacacaga 44789030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 12774190 - 12774243
Alignment:
Q  220 atcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggca 273  Q
    ||||||||||| |||||||||||||| ||||  ||||| |||||||||||||||    
T  12774190 atcccgccacttaggcaccacaaagagatatgatattatcccgccactaaggca 12774243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 44789000 - 44788932
Alignment:
Q  204 aatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggca 273  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||||| |  |||||| |||||||||||    
T  44789000 aatgcaatatgatattagcccgccactaaggcaccacacag-aatataattgtaaccctccactaaggca 44788932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 44788910 - 44788866
Alignment:
Q  185 cccgccacttaggcacaacaatgcaatatgatgttatcccgccac 229  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||    
T  44788910 cccgccacttaggcacaacaatgcaatatgatatttacccgccac 44788866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 44789057 - 44789002
Alignment:
Q  117 ataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaat 173  Q
    ||||||||||||  |||||||||||||||||||||||   |||||||||||||||||    
T  44789057 ataacccgccacacaggcaccacacagatgcatatgc-cttgcatgatcatgaaaat 44789002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 521
Target Start/End: Complemental strand, 29270792 - 29270722
Alignment:
Q  451 aaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgtttt 521  Q
    ||||||||||||| |||||| ||||||||||  ||||||||||| || | | | ||||||||| |||||||    
T  29270792 aaatataattaaaataataatttttataaaatattaaattttactatgtaactacatattttaattgtttt 29270722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 34397559 - 34397604
Alignment:
Q  124 gccactaaggcaccacacagatgcatatgctaatgcatgatcatgaa 170  Q
    |||||||||||||||||||||||||||| |  |||||||||||||||    
T  34397559 gccactaaggcaccacacagatgcatatac-catgcatgatcatgaa 34397604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 36731989 - 36732043
Alignment:
Q  220 atcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaa 274  Q
    ||||||||||| ||||| ||| |||||||||  |||||||||||| |||||||||    
T  36731989 atcccgccacttaggcatcactaagaaatatgatattaacccgcccctaaggcaa 36732043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 35670550 - 35670603
Alignment:
Q  220 atcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggca 273  Q
    ||||||||||  ||||||||||||||| ||||   |||||||||||||||||||    
T  35670550 atcccgccacataggcaccacaaagaattataagtttaacccgccactaaggca 35670603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 32921 - 33100
Alignment:
Q  19 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggca-ccacacagaa---- 113  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||        
T  32921 ataacagactcaatgcaatgcaatgatgtgtaaaatgcatgctcttaaatactacatgatccggatataacccgccacacaggcatccacacagaatata 33020  T
Q  114 ataataacccgccactaaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaacattaaatcccgccacttaggcac 200  Q
    || || ||||| |||  |||||||||||||||||||||| | |||||||||      |||||| | |||||||||||||||||||||    
T  33021 attatgacccgtcacacaggcaccacacagatgcatatg-tcatgcatgat------aatgaaaactaaatcccgccacttaggcac 33100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 410 - 513
Target Start/End: Complemental strand, 374 - 271
Alignment:
Q  410 aaatgtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat 509  Q
    ||||| ||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||    
T  374 aaatggcattctacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatagatttatat 275  T
Q  510 ttta 513  Q
    ||||    
T  274 ttta 271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 242648 - 242783
Alignment:
Q  33 gcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaataataacccgccactaag 132  Q
    |||||||||| ||| | || ||||||||||||| | |||| |||||| ||||||| ||||||||||||||||||||||||   |||||||||||||  ||    
T  242648 gcaatgcaattatgcgtaagatgcatgctcttata-actatatgatctggatataacccgccacacaggcaccacacaga---aataacccgccacacag 242743  T
Q  133 gcaccacacagatgcatatgctaatgcatgatcatgaaaat 173  Q
    |||||||||| ||||||||||| ||||| ||||||||||||    
T  242744 gcaccacacatatgcatatgct-atgcaagatcatgaaaat 242783  T

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Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 242883 - 242936
Alignment:
Q  188 gccacttaggcacaacaatgcaatatgatgttatcccgccactaaggcaccaca 241  Q
    |||||| |||||||||||||||||||||| ||  |||| ||| |||||||||||    
T  242883 gccactaaggcacaacaatgcaatatgatatttacccgtcacaaaggcaccaca 242936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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