View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6794_low_2 (Length: 407)
Name: NF6794_low_2
Description: NF6794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6794_low_2 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 27405574 - 27405522
Alignment:
| Q |
3 |
caatgaagagggaaacatcacacaagaaactcaacctgaagaaacactaactc |
55 |
Q |
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| T |
27405574 |
caatgaagatgtaaacatcacacaagaaactcaacctgaagaaacactgactc |
27405522 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 10764375 - 10764427
Alignment:
| Q |
355 |
gataatgatagctatgtttcagaggagttaaggagtccaataagcagtgatga |
407 |
Q |
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| T |
10764375 |
gataatgacagctatgtttctgaggagttaaggagtccaataagcactgatga |
10764427 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 41019300 - 41019248
Alignment:
| Q |
355 |
gataatgatagctatgtttcagaggagttaaggagtccaataagcagtgatga |
407 |
Q |
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| T |
41019300 |
gataatgacagctatgtttctgaggagttaaggagtccaataagcactgatga |
41019248 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 47267695 - 47267643
Alignment:
| Q |
355 |
gataatgatagctatgtttcagaggagttaaggagtccaataagcagtgatga |
407 |
Q |
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| T |
47267695 |
gataatgacagctatgtttctgaggagttaaggagtccaataagcactgatga |
47267643 |
T |
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