View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6794_low_4 (Length: 343)
Name: NF6794_low_4
Description: NF6794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6794_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 52199438 - 52199773
Alignment:
| Q |
8 |
tggacatcaaaagaaaaccaaaattctaaaaacgtgttgcatgaaaaagggtgtggaaatataactcatttttatctatcttaaccagtgggcatgcaga |
107 |
Q |
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| T |
52199438 |
tggacatcaaaagaaaaccaaaattctaaaaacgtgttgcatgaaaaagggtgtggaaatataactcatttttatctatcttaaccagtgggcatgcaga |
52199537 |
T |
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| Q |
108 |
attcaaaacatcaaatgcaaaatggcatgaaagccaatgagaatgaaagtagatattcatattagtgagtaaggtagatattgaaatggatgatggtgtc |
207 |
Q |
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| T |
52199538 |
attcaaaacatcaaatgcaaaatggcatgaaagccaatgagaatgaaagtagatattcatattagtgagtaaggtagatatcgaaatggatgatggtgtc |
52199637 |
T |
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| Q |
208 |
gactccatccgtggtgtgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgtacttaccactcccaccaatcactgcaact |
307 |
Q |
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| T |
52199638 |
gactccatccgtggtgtgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgtacttaccactcccaccaatcactgcaact |
52199737 |
T |
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| Q |
308 |
tcagatttcagcgatgctgtcctgtgaactccaaac |
343 |
Q |
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| T |
52199738 |
tcagatttcagcgatgctgtcctgtgaactccaaac |
52199773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 303
Target Start/End: Complemental strand, 6735433 - 6735309
Alignment:
| Q |
179 |
aggtagatattgaaatggatgatggtgtcgactccatccgtggtgtgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgt |
278 |
Q |
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| T |
6735433 |
aggtagatactgaaatgcaagatggtgtcagccccatctgtggtgtgttggtcctccttcagtaggttctcaattgcagcatatcctctagcattctcat |
6735334 |
T |
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| Q |
279 |
acttaccactcccaccaatcactgc |
303 |
Q |
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| T |
6735333 |
acttcccagtcccaccaatcactgc |
6735309 |
T |
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