View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6794_low_5 (Length: 322)
Name: NF6794_low_5
Description: NF6794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6794_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 40960310 - 40960613
Alignment:
| Q |
1 |
aaccaactaaacaaacaccactaaattacctaagcatacaatgtaaaccatttgtaaaagaggcaaggtggacccgaattcttccccaaaaacaaactcc |
100 |
Q |
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| T |
40960310 |
aaccaactaaacaaacaccactaaattacctaagcatacaatgtaaaccattcgtaaaagaggcaaggtggacccgaattcttccc-aaaaacaaactcc |
40960408 |
T |
|
| Q |
101 |
aagacaaactttttatcgcctctacaacctccggcactttagatgctttaaaaccgaagattttgtcgttccttgccttccaagtgttggatagaagtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960409 |
aagacaaactttttatcgcctctacaacctccggcactttagatgctttaaaaccgaagattttgtcgttccttgccttccaagtgttggatagaagtag |
40960508 |
T |
|
| Q |
201 |
taaaggaattgttggtacatcttaaaatgattcacatgttagataaatatctcagaatgcactttcagaaaactacttgtgtaccgcaaaaatgctagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960509 |
taaaggaattgttggtacatcttaaaatgattcacatgttagataaatatctcagaatgcactttcagaaaactacttgtgtaccgcaaaaatgctagat |
40960608 |
T |
|
| Q |
301 |
gtttt |
305 |
Q |
| |
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||||| |
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| T |
40960609 |
gtttt |
40960613 |
T |
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