View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6794_low_8 (Length: 222)

Name: NF6794_low_8
Description: NF6794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6794_low_8
NF6794_low_8
[»] chr7 (4 HSPs)
chr7 (35-126)||(62533-62623)
chr7 (35-117)||(23963969-23964050)
chr7 (4-40)||(15535067-15535103)
chr7 (4-40)||(15538541-15538577)
[»] chr4 (2 HSPs)
chr4 (34-137)||(26295151-26295253)
chr4 (34-222)||(10764484-10764671)
[»] chr3 (1 HSPs)
chr3 (34-222)||(41019004-41019191)
[»] chr1 (1 HSPs)
chr1 (34-222)||(47267399-47267586)
[»] scaffold0369 (1 HSPs)
scaffold0369 (4-40)||(13645-13681)
[»] chr8 (1 HSPs)
chr8 (4-40)||(18648523-18648559)
[»] chr5 (1 HSPs)
chr5 (4-40)||(17389413-17389449)


Alignment Details
Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 62623 - 62533
Alignment:
Q  35 ttttcattccttgcacaaaatattaaccattcacatgtatcatgctcacatattgcccttgcccttgtttttatcattcttcacccatctaa 126  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||    
T  62623 ttttcattccttgcacagaatattaaccattcacatgtatcatgctcacatattgcccttgaccatg-ttttatcattcttcacccatctaa 62533  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 23964050 - 23963969
Alignment:
Q  35 ttttcattccttgcacaaaatattaaccattcacatgtatcatgctcacatattgcccttgcccttgtttttatcattcttca 117  Q
    |||||||||||||||||| |||||| ||| ||||||||||||||||  || |  ||||||||||||| |||||||||||||||    
T  23964050 ttttcattccttgcacaatatattacccaatcacatgtatcatgcttgcaaacagcccttgcccttg-ttttatcattcttca 23963969  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 15535067 - 15535103
Alignment:
Q  4 ctttctctatatatcagaattttattttcacttttca 40  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  15535067 ctttctctatatatcagaattgtatttccacttttca 15535103  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 15538541 - 15538577
Alignment:
Q  4 ctttctctatatatcagaattttattttcacttttca 40  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  15538541 ctttctctatatatcagaattgtatttccacttttca 15538577  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 26295151 - 26295253
Alignment:
Q  34 cttttcattccttgcacaaaatattaaccattcacatgtatcatgctcacatattgcccttgcccttgtttttatcattcttcacccatctaatttgctt 133  Q
    ||||||||||||| |||||||||||||||| |  |||||||||||||  || || ||||||||||||  |||||||||||||||||||| ||||||||||    
T  26295151 cttttcattccttccacaaaatattaaccaattgcatgtatcatgcttgcaaatagcccttgccctt-attttatcattcttcacccatgtaatttgctt 26295249  T
Q  134 tccc 137  Q
    ||||    
T  26295250 tccc 26295253  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 222
Target Start/End: Complemental strand, 10764671 - 10764484
Alignment:
Q  34 cttttcattccttgcacaaaatattaaccattcacatgtatcatgctcacatattgcccttgcccttgtttttatcattcttcacccatctaatttgctt 133  Q
    |||||||| |||||||||| |||||| |||  ||||||| |||||||  |||   |||||||||||  || ||||||||||||| |||  |||| |  ||    
T  10764671 cttttcatcccttgcacaatatattacccaaccacatgtttcatgcttgcattcggcccttgccctc-ttcttatcattcttcaaccacttaatatcttt 10764573  T
Q  134 tccctgatgattattgtactccctgacagcatccttaaattttttaatggtactaaactccattccaagttccaaggttacctcaccaa 222  Q
    |||||  ||| |  |||| ||| | ||||||||||||||||||| ||  |||  |||||||||||||||||||||| |||| |||||||    
T  10764572 tcccttgtgaatggtgtaatccttaacagcatccttaaatttttgaagagtagcaaactccattccaagttccaagtttacatcaccaa 10764484  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 222
Target Start/End: Original strand, 41019004 - 41019191
Alignment:
Q  34 cttttcattccttgcacaaaatattaaccattcacatgtatcatgctcacatattgcccttgcccttgtttttatcattcttcacccatctaatttgctt 133  Q
    |||||||| |||||||||| |||||| |||  ||||||| |||||||  |||   |||||||||||  || ||||||||||||| |||  |||| |  ||    
T  41019004 cttttcatcccttgcacaatatattacccaaccacatgtttcatgcttgcattcggcccttgccctc-ttcttatcattcttcaaccacttaatatcttt 41019102  T
Q  134 tccctgatgattattgtactccctgacagcatccttaaattttttaatggtactaaactccattccaagttccaaggttacctcaccaa 222  Q
    |||||  ||| |  |||| ||| | ||||||||||||||||||| ||  |||  |||||||||||||||||||||| |||| |||||||    
T  41019103 tcccttgtgaatggtgtaatccttaacagcatccttaaatttttgaagagtagcaaactccattccaagttccaagtttacatcaccaa 41019191  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 222
Target Start/End: Original strand, 47267399 - 47267586
Alignment:
Q  34 cttttcattccttgcacaaaatattaaccattcacatgtatcatgctcacatattgcccttgcccttgtttttatcattcttcacccatctaatttgctt 133  Q
    |||||||| |||||||||| |||||| |||  ||||||| |||||||  |||   |||||||||||  || ||||||||||||| |||  |||| |  ||    
T  47267399 cttttcatcccttgcacaatatattacccaaccacatgtttcatgcttgcattcagcccttgccctc-ttcttatcattcttcagccacttaatatcttt 47267497  T
Q  134 tccctgatgattattgtactccctgacagcatccttaaattttttaatggtactaaactccattccaagttccaaggttacctcaccaa 222  Q
    |||||  ||| |  |||| ||| | ||||||||||||||||||| ||  |||  |||||||||||||||||||||| |||| |||||||    
T  47267498 tcccttgtgaatggtgtaatccttaacagcatccttaaatttttgaagagtagcaaactccattccaagttccaagtttacatcaccaa 47267586  T

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Target: scaffold0369 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 13681 - 13645
Alignment:
Q  4 ctttctctatatatcagaattttattttcacttttca 40  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  13681 ctttctctatatatcagaattgtatttccacttttca 13645  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 18648523 - 18648559
Alignment:
Q  4 ctttctctatatatcagaattttattttcacttttca 40  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  18648523 ctttctctatatatcagaattgtatttccacttttca 18648559  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 17389413 - 17389449
Alignment:
Q  4 ctttctctatatatcagaattttattttcacttttca 40  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  17389413 ctttctctatatatcagaattgtatttccacttttca 17389449  T

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