View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6796_high_1 (Length: 1259)
Name: NF6796_high_1
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_high_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 1129; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1129; E-Value: 0
Query Start/End: Original strand, 1 - 1242
Target Start/End: Complemental strand, 50488332 - 50487081
Alignment:
| Q |
1 |
ctttgtttgttgatttagaaactagatccgaattccctgcagtgggaaaggtacgtttctttcatgcagtaaacgatctcaagtgaggtctaacggttta |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50488332 |
ctttgtttgttgatttagcaactagatccggattccctgcagtgggaaaggtacgtttctttcatgcagtaaacgatctcaagtgaggtctaacggttta |
50488233 |
T |
|
| Q |
101 |
gattacacaataccaaaatcaattttaaatgatctcaactgttaatttgag----------ttgagataaaataaattgtgtgaagctgcaccaaataca |
190 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
50488232 |
cattacacaataccaaaatcaattttaaacgatctcgactgttaatttgagattggatgagttgagataaaaaaaattgtgtgaagctgcaccaaataca |
50488133 |
T |
|
| Q |
191 |
aatctgagaaattcttcctctgggtaattgggggttgacaaattctccaaaccagatatgactcttcttgtctgtaacatatttagtgatcagcaatgca |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50488132 |
aatctgagaaattcttcctctgggtaattgggggttgacaaattctccaaaccagatatgactcttcttgtctgtaacatatttagtgatcagcaatgca |
50488033 |
T |
|
| Q |
291 |
aaataacgatttaagttccttgataaacaccttatggatacttttcttttcagcacaaaataaaaggtggatcgcactgtgttagttgtattttgactcc |
390 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50488032 |
aaataacgatttaagttccttgatgaacaccttacggatacttttcttttcagcacaaaataaaaggtggatcgcactgtgttagttgtattttgactcc |
50487933 |
T |
|
| Q |
391 |
tataaaataaaaagctgagtatgtaaatgcttgatagtaaaacatttgaggttttattcaaggttaatttatgttattgattcattatagatatcaattg |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50487932 |
tataaaataaaaagctgagtatgtaaatgcttgatagtaaaacatttgaggttttattcaaggttaatttatgttattgattcattatagatatcaattg |
50487833 |
T |
|
| Q |
491 |
aaagaagaagagtttgtcctgtattttgaagtctcttattttgacatacaacctgcatagtagtttctgtgaatgtctttgatcttcacatgctctttta |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50487832 |
aaagaagaagagtttgtcctgtattttgaagtctcttattttgacatacaacctgcatagtagtttctgtgaatgtctttgatcttcacatgctctttta |
50487733 |
T |
|
| Q |
591 |
atttattcgtttctaattcgagattcaaatttaaatatctttttatgcatcactccctattcaagaagaatgttcttattctcttcctgatgttttgact |
690 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50487732 |
atttattcgtttctaattctagattcaaatttaaatatctttttatgcatcactccctattcaagaagaatgttcttattctcttcctgatgttttgact |
50487633 |
T |
|
| Q |
691 |
tcgaaggagtggaaaaaagatcacatggatgatttcgtcaagatgactgatagcttcatgcaacagttggaattgccagaatcaaagccaagagttcaga |
790 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50487632 |
tcgaaggagtggaaaaaagatcacatgaatgatttcgtcaagatgactgatagcttcatgcaacagttggaattgccagaatcaaagccaagagttcaga |
50487533 |
T |
|
| Q |
791 |
cttatgaaaccttctataagcaagaaaacgataagccgcttgacccttgatgcttacagcttgtaaaaattctgcattatgtttactgtgcagtattgta |
890 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50487532 |
cttatgaaaccttctataagcaagaaaacgataagccacttgacccttgatgcttacagcttgtaaaaattctgcattatgtttactgtgcagtattgta |
50487433 |
T |
|
| Q |
891 |
tgatactatttttcttaataattatcagtttctcttggaatcatacatatgatgattttaacaagtatattaaggnnnnnnnnacaatggcaaggtagtg |
990 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |
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|
| T |
50487432 |
tgatactatttttcttaataattatcagtttctcttggaatcatacatatgatgatttcaacaagtatattaatgttttttttacaatggcaaggtagtg |
50487333 |
T |
|
| Q |
991 |
atatatttatgatcaaattcagactattccttagaacctataaacccctaatcttaataagcttttattgaatcgggacgcaatatgtaaccaaatttac |
1090 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
50487332 |
atatatttatgatcaaattcagactattccttagaacctataaacccctaatcttactaagcttttattgaatcgagaggcaatatgtaaccaaatttac |
50487233 |
T |
|
| Q |
1091 |
cacctatttatatagaatgagctcttaatttttcaaaagagatgtgtagaatttcttatggtattcttaaatttataataaattaaattacctgtgatgc |
1190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50487232 |
cacctatttatatagaatgagctcttaatttttcaaaagagatgtgtagaatttcttatggtattcttaaatttataataaattaaattacctgtgatgc |
50487133 |
T |
|
| Q |
1191 |
tatacatctgtttatattgaaaagagggaacagaaaacaagatgtcatgatg |
1242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50487132 |
tatacatctgtttatattgaaaagagggaacagaaaacaagatgtcatgatg |
50487081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 10579118 - 10579170
Alignment:
| Q |
102 |
attacacaataccaaaatcaattttaaatgatctcaactgttaatttgagttg |
154 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
10579118 |
attacagaataacaaaatcaattttaaatgatctcatcctttaatttgagttg |
10579170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 29059135 - 29059077
Alignment:
| Q |
93 |
acggtttagattacacaataccaaaatcaattttaaatgatctcaactgttaatttgag |
151 |
Q |
| |
|
|||||||| ||||| || || |||||||| |||||||||||||| ||||||||||||| |
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|
| T |
29059135 |
acggtttatattacgcattaacaaaatcagttttaaatgatctcggctgttaatttgag |
29059077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 34852373 - 34852332
Alignment:
| Q |
97 |
tttagattacacaataccaaaatcaattttaaatgatctcaa |
138 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||||| |
|
|
| T |
34852373 |
tttagattacacaataacaaaatcaatttcaaataatctcaa |
34852332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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