View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6796_high_12 (Length: 304)
Name: NF6796_high_12
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_high_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 16008256 - 16008554
Alignment:
| Q |
1 |
aaatatatcagtgaaaaaataataaatattgtattgaatttttaagtggcaactattttgagacggatagnnnnnnntgtaaacgtcacaacttagtgga |
100 |
Q |
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| T |
16008256 |
aaatatatcagtgaaaaaataataaatattgtattgaattttaaagtggcaactattttgagacggatagaaaaaaatgtaaacgtcacaacttagtgga |
16008355 |
T |
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| Q |
101 |
aaaatgaaatatttgaacatttcacaacctcaaacattcattcaacacatcattttatctctatctctttcatannnnnnnnnnctttccaaatttcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
16008356 |
aaaatgaaatatttgaacatttcacaacctcaaacattcattcaacacatcattttatctctatctctttcatatttttt-----tttcaaaatttcttt |
16008450 |
T |
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| Q |
201 |
catcctataattcatcaatttactactaccttcatatcgtttcctctttctaaaggtgtatactatacatatatttgaatttccatcaaacctaattctt |
300 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
16008451 |
catcctataattcatcaatttactactgcattcatatcgtttcctctttctaaaggtgtatactatacatatatttgaatgtccatcaaacataattctt |
16008550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 10659465 - 10659502
Alignment:
| Q |
133 |
aacattcattcaacacatcattttatctctatctcttt |
170 |
Q |
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| T |
10659465 |
aacattcattcaacacatcatttaatctttatctcttt |
10659502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 32631399 - 32631347
Alignment:
| Q |
13 |
gaaaaaataataaatattgtattga-atttttaagtggcaactattttgagac |
64 |
Q |
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|||||||||||| |||||| ||||| |||||||||||||| ||||||||||| |
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| T |
32631399 |
gaaaaaataatagatattgcattgatatttttaagtggcatttattttgagac |
32631347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 26650439 - 26650467
Alignment:
| Q |
140 |
attcaacacatcattttatctctatctct |
168 |
Q |
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| T |
26650439 |
attcaacacatcattttatctctatctct |
26650467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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