View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6796_high_13 (Length: 302)
Name: NF6796_high_13
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 50488308 - 50488591
Alignment:
| Q |
1 |
ctagtttctaaatcaacaaacaaagttcttacttactaatgcaaccatgaacaaaggcttaagcaaataattaagtggcaaatgatgaagtaattgaccc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
50488308 |
ctagttgctaaatcaacaaacaaagttcttacttactaatgcaaccatgaacaaaggcttaagtaaataattaagtggcaaatgatgaagtaattgtccc |
50488407 |
T |
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| Q |
101 |
aacatacagagaataaatatattgaatatcatttcatccctaaaatggtaggaagaatgatacaatagaaggaatttgtttggaaaatacctcaaaatcc |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50488408 |
aacacacagagaataaatatattgaatatcatttcatccccaaaatggtaggaagaatgatacaatagaaggaatttgtttggaaaatacctcaaaatcc |
50488507 |
T |
|
| Q |
201 |
cactcagcatataaatcaggatcatttggattgctccaaacataagcataaactctcaaattttcagaattgtcctgtacaaat |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50488508 |
cactcagcatataaatcaggatcatttggattgctccaaacataagcataaactctcaaattttcagaattgtcctgtacaaat |
50488591 |
T |
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