View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6796_high_14 (Length: 270)

Name: NF6796_high_14
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6796_high_14
NF6796_high_14
[»] chr4 (9 HSPs)
chr4 (19-270)||(11468380-11468631)
chr4 (19-270)||(11522830-11523081)
chr4 (172-270)||(11507200-11507298)
chr4 (34-270)||(11445405-11445659)
chr4 (34-270)||(11547431-11547685)
chr4 (166-270)||(34784012-34784116)
chr4 (165-266)||(34775795-34775896)
chr4 (122-167)||(34775915-34775960)
chr4 (19-167)||(11507321-11507469)
[»] scaffold0794 (2 HSPs)
scaffold0794 (172-270)||(1857-1955)
scaffold0794 (19-167)||(1978-2126)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 11468380 - 11468631
Alignment:
Q  19 cttctcctctgagaaccatttcttagaggagtgccacatatccagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcacca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11468380 cttctcctctgagaaccatttcttagaggagtgccacatatccagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcacca 11468479  T
Q  119 ttgatgagaagctttgaaggaggtgtgagagcataagctgtttcttctttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11468480 ttgatgagaagctttgaaggaggtgtgagagcataagctgtttcttctttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacc 11468579  T
Q  219 tatataggacactaactttagaagggtgaagtttcaaagatgaggctaattc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11468580 tatataggacactaactttagaagggtgaagtttcaaagatgaggctaattc 11468631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 11523081 - 11522830
Alignment:
Q  19 cttctcctctgagaaccatttcttagaggagtgccacatatccagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcacca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11523081 cttctcctctgagaaccatttcttagaggagtgccacatatccagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcacca 11522982  T
Q  119 ttgatgagaagctttgaaggaggtgtgagagcataagctgtttcttctttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11522981 ttgatgagaagctttgaaggaggtgtgagagcataagctgtttcttctttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacc 11522882  T
Q  219 tatataggacactaactttagaagggtgaagtttcaaagatgaggctaattc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11522881 tatataggacactaactttagaagggtgaagtttcaaagatgaggctaattc 11522830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 11507298 - 11507200
Alignment:
Q  172 tgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattc 270  Q
    ||||||||| || |||||||||| ||||||||||||||||||||  | ||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  11507298 tgttgttttcgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttagaagggtggagtttcaaagatgaagctaattc 11507200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 270
Target Start/End: Original strand, 11445405 - 11445659
Alignment:
Q  34 ccatttcttagaggagtgccacatatccagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcaccattgatgagaagcttt 133  Q
    |||||||||||||||||||||||  | ||||  |||||||||||| | |||  |||||| |||||  ||||| |||||||  ||| | ||||||||| ||    
T  11445405 ccatttcttagaggagtgccacacgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcatt 11445504  T
Q  134 gaaggaggtgtgagagcataagctgtttcttctt------------------tcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaaga 215  Q
    |||||||| ||||||| ||| | |||||||||||                  ||| |||||||||||| |||||||||| ||||||||||| ||||||||    
T  11445505 gaaggaggagtgagagaatatgttgtttcttcttctccttctttgccattcatcagtgttgtttttgcaaagaaaccattgtgtgttagcaggcgcaaga 11445604  T
Q  216 acctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattc 270  Q
      | ||| |||||||||||||| ||||| || |||||||||||||| ||||||||    
T  11445605 gacgatacaggacactaactttcgaaggatggagtttcaaagatgaagctaattc 11445659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 270
Target Start/End: Complemental strand, 11547685 - 11547431
Alignment:
Q  34 ccatttcttagaggagtgccacatatccagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcaccattgatgagaagcttt 133  Q
    |||||||||||||||||||||||  | ||||  |||||||||||| | |||  |||||| |||||  ||||| |||||||  ||| | ||||||||| ||    
T  11547685 ccatttcttagaggagtgccacacgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcatt 11547586  T
Q  134 gaaggaggtgtgagagcataagctgtttcttctt------------------tcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaaga 215  Q
    |||||||| ||||||| ||| | |||||||||||                  ||| |||||||||||| |||||||||| ||||||||||| ||||||||    
T  11547585 gaaggaggagtgagagaatatgttgtttcttcttctccttctttgccattcatcagtgttgtttttgcaaagaaaccattgtgtgttagcaggcgcaaga 11547486  T
Q  216 acctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattc 270  Q
      | ||| |||||||||||||| ||||| || |||||||||||||| ||||||||    
T  11547485 gacgatacaggacactaactttcgaaggatggagtttcaaagatgaagctaattc 11547431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 270
Target Start/End: Complemental strand, 34784116 - 34784012
Alignment:
Q  166 tttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggct 265  Q
    |||||||||||||||||  ||||| |||| ||||||||  | ||| ||||| | ||| ||||   |||||||||||||||| ||||| ||||||||||||    
T  34784116 tttcactgttgtttttgtaaagaagccattgtgtgttaaaaggcgtaagaatcgatagaggatgttaactttagaagggtggagttttaaagatgaggct 34784017  T
Q  266 aattc 270  Q
    |||||    
T  34784016 aattc 34784012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 34775896 - 34775795
Alignment:
Q  165 ctttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggc 264  Q
    |||||||| |||||||||| ||||||||||  |||||||  | ||| ||||| |  |  || | | ||||||||||||||||||||||||||||||||||    
T  34775896 ctttcactattgtttttgcaaagaaaccattatgtgttaaaaggcgtaagaatcggtgaagtatattaactttagaagggtgaagtttcaaagatgaggc 34775797  T
Q  265 ta 266  Q
    ||    
T  34775796 ta 34775795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 34775960 - 34775915
Alignment:
Q  122 atgagaagctttgaaggaggtgtgagagcataagctgtttcttctt 167  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||||    
T  34775960 atgagaagctttgaaggaggtgtgagagaatatgctatttcttctt 34775915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 11507469 - 11507321
Alignment:
Q  19 cttctcctctgagaaccatttcttagaggagtgccacatatccagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcacca 118  Q
    ||||||||| | || ||||||| ||||||||| ||| || | ||||  |||||||||||   ||||  |||||| |||||  ||||| |||||||  |||    
T  11507469 cttctcctcagtgagccatttcgtagaggagtaccatatgttcagacgacatggatgaaccgttccggtaacaaatggtgacaaacatgttgatttgcca 11507370  T
Q  119 ttgatgagaagctttgaaggaggtgtgagagcataagctgtttcttctt 167  Q
     | ||||||||| |||||||||| ||||||| |||   |||||||||||    
T  11507369 cttatgagaagcattgaaggaggagtgagagaatatattgtttcttctt 11507321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 1955 - 1857
Alignment:
Q  172 tgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattc 270  Q
    ||||||||| || |||||||||| ||||||||||||||||||||  | ||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  1955 tgttgttttcgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttagaagggtggagtttcaaagatgaagctaattc 1857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 2126 - 1978
Alignment:
Q  19 cttctcctctgagaaccatttcttagaggagtgccacatatccagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcacca 118  Q
    ||||||||| | || ||||||| ||||||||| ||| || | ||||  |||||||||||   ||||  |||||| |||||  ||||| |||||||  |||    
T  2126 cttctcctcagtgagccatttcgtagaggagtaccatatgttcagacgacatggatgaaccgttccggtaacaaatggtgacaaacatgttgatttgcca 2027  T
Q  119 ttgatgagaagctttgaaggaggtgtgagagcataagctgtttcttctt 167  Q
     | ||||||||| |||||||||| ||||||| |||   |||||||||||    
T  2026 cttatgagaagcattgaaggaggagtgagagaatatattgtttcttctt 1978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University