View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6796_high_21 (Length: 236)
Name: NF6796_high_21
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30649315 - 30649538
Alignment:
| Q |
1 |
acatggaggaactcaaaactgctgtgttggattgtgacagttataagtgtcccggttcggatggagttaactttggtttcattaaatatttctagggaga |
100 |
Q |
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| T |
30649315 |
acatggaggaactcaaaactgcggtgttggattgtgacagttataagtgtcccggtccggatgaagttaactttggtttcattaaatatttctagggtga |
30649414 |
T |
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| Q |
101 |
tatgaaagttgatcttttgcgttttgtgtttgatttccaccgtaattgaaagctcctgaaaggtattaacagtactttcatctctctaatatcgaaaaaa |
200 |
Q |
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| T |
30649415 |
tatgaaagatgatcttttgtgttttgtgtctgatttccaccgtaatggaaagctcctgaaaggtattaacagtacgttcatctctctaatatcgaaaaaa |
30649514 |
T |
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| Q |
201 |
gatagtccgcagactttgaatgat |
224 |
Q |
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| T |
30649515 |
gatagtccgcagactttgaatgat |
30649538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 5498951 - 5498886
Alignment:
| Q |
21 |
gctgtgttggattgtgacagttataagtgtcccggttcggatggagttaactttggtttcattaaa |
86 |
Q |
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| T |
5498951 |
gctgtgtgggattgtgatagtgataagagtcctggtccggatggaattaattttggtttcattaaa |
5498886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 23876826 - 23877005
Alignment:
| Q |
2 |
catggaggaactcaaaactgctgtgttggattgtgacagttataagtgtcccggttcggatggagttaactttggtttcattaaatatttctagggagat |
101 |
Q |
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| T |
23876826 |
catggaggaactcaaaattgttgtgtgggattgtgatagctacaagtgtcttggcccggatggagtgaattttggctttattaaatatttttggctcgat |
23876925 |
T |
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| Q |
102 |
atgaaagttgatcttttgcgttttgtgtttgatttccaccgtaattgaaagctcctgaaaggtattaacagtactttcat |
181 |
Q |
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||||||| |||||| ||| |||||||| |||||| ||||||||| ||||||| | |||||||| |||||||| ||||| |
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| T |
23876926 |
atgaaagaagatcttatgcattttgtgtctgattttcaccgtaatggaaagcttttaaaaggtataaacagtacattcat |
23877005 |
T |
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