View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6796_high_24 (Length: 208)
Name: NF6796_high_24
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_high_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 50487253 - 50487081
Alignment:
| Q |
19 |
gcaatatgtaaccaaatttaccacctatttatatagaatgagctcttaatttttcaaaagagatgtgtagaatttcttatggtattcttaaatttataat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50487253 |
gcaatatgtaaccaaatttaccacctatttatatagaatgagctcttaatttttcaaaagagatgtgtagaatttcttatggtattcttaaatttataat |
50487154 |
T |
|
| Q |
119 |
aaattaaattacctgtgatgctatacatctgtttatattgaaaagagggaacagaaaacaagatgtcatgatg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50487153 |
aaattaaattacctgtgatgctatacatctgtttatattgaaaagagggaacagaaaacaagatgtcatgatg |
50487081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University